Crassostrea virginica (eastern oyster): 111135552
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Entry
111135552 CDS
T09197
Name
(RefSeq) non-canonical poly(A) RNA polymerase PAPD5-like isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111135552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111135552
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111135552
Enzymes [BR:
cvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
111135552
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111135552
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111135552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
PAP_NTPase
Polbeta
TUTase
DNA_pol_B_palm
Motif
Other DBs
NCBI-GeneID:
111135552
NCBI-ProteinID:
XP_022341414
UniProt:
A0A8B8ENB8
LinkDB
All DBs
Position
5:complement(61352323..61361213)
Genome browser
AA seq
672 aa
AA seq
DB search
MDPRIAWSTPEQLGIAHDIWTRICETQIGVDNMSLNNLNQNMNYRPLDFISVSANNNVTI
KQAATNFQNQQNKRKRDNKASTYGLNHSSYKHFLYENGGLTPWIPKEKKYSPGILGLHEE
IKDFYDYMSPKPEEANMRNEVVQRIKDVVKDLWPDAKVEIFGSFRTGLYLPTSDIDLVVH
GKWDSLPLFTLEKALREKGYADPASIKVLDKASVPIIKMVDLETEVKVDISFNTQNSVES
AELITKFMDEFPNLKYLVLVLKQFLLQRDLNEVFTGGISSYSLIYMTVSFFQLHPRFEAV
DPNANLGVLLIEFFELYGRNFNYLKAGIRIKDGGSYVAKDDIVKSMDNGYRPSMLCIEDP
LTKGNDIGRSSYGAMQVKQAFDYAFVVMAYAVSPQFMIARKPKHSILGRIIRVTDEVVEY
RCWIKKTFPRNISENSLIDSKSRSYAMVANSGKTGGSKSDLPIDNTKSSNEDESKPSVAE
SEHSDGSSVYKSSSSSGASSSSSSLISDTDSEPDPQQQPAEFEVTKSTPTTPVKTEKKTA
IVSQEFTRSRDRGHSNSKPRTGSSKSRDASCSSVSSTHSAGSNRTSVNGGQRGYNSYDNR
MNSNRNSGHYDNGPSRKPYHGGSAQNKNGYEGGRVYTRTNSSNSSNKKKRNSGPGYGYPK
RDSYSSGSSNRR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatccaagaatagcttggtccacaccggaacaattaggaatagctcatgacatttgg
acaaggatctgcgagacacagataggcgtggataacatgtcgttgaacaatttaaatcaa
aatatgaactacagaccgctggattttatttcggttagtgcaaacaacaatgtgactatt
aagcaagcggctacaaactttcagaatcaacaaaacaagaggaaaagggacaacaaagcc
agtacatacggtttaaaccattcgtcctataaacattttttgtatgaaaatggtggatta
acgccttggatcccgaaagaaaagaaatattcacccggaatacttggactacatgaggaa
ataaaagacttctatgattatatgtcacccaaaccagaagaagccaacatgaggaatgag
gttgtgcagagaattaaagacgttgtgaaagatctatggccagatgcaaaggtggaaatc
tttggaagtttcagaactgggttgtacttgccaacaagtgacatagatctggttgtgcat
ggaaaatgggacagtttaccattattcacgctagaaaaagctctcagagaaaaaggctat
gctgaccctgcctctatcaaagtgctagacaaagcatctgtacccatcattaaaatggtt
gatctcgagacagaagtgaaagtggatataagctttaacactcagaattcagtagagagt
gctgaactcattactaaattcatggatgaattccccaatctaaagtatttggttttggtg
ctgaaacaattccttctgcagagagatttgaatgaagtgttcactggtggaattagttcg
tacagtctaatctacatgacagtcagcttctttcagcttcatcccagatttgaggctgta
gatcccaatgccaacctaggagtgcttctaattgagttttttgaactctatggaaggaat
ttcaactacttgaaagcaggcattcgaatcaaagatggagggtcttacgtggcgaaagat
gacattgtgaagagcatggacaatggatatcgaccctccatgctgtgtattgaagatcca
ttgacaaaaggaaacgacattggaagaagttcttatggtgctatgcaagtgaagcaggcc
tttgattacgcttttgtggttatggcttatgctgtgagtccacaattcatgattgcaaga
aaaccgaagcatagcatactcggtcgaatcataagagtgacagatgaggtggtcgagtac
agatgttggatcaagaagacattccctcgtaacatctcagaaaacagcctcattgactcc
aaaagtaggagctatgcaatggtggccaacagcggtaaaacaggaggttccaagtctgac
ctgcccatcgataacactaagagcagtaatgaagacgagtccaagccgtcggtggcggag
agtgaacactcggacggaagctctgtgtacaagtccagcagcagttcaggggccagcagc
tcctcctctagtctcatcagtgacactgactcggaacctgatccacagcaacaaccagcc
gagtttgaagtgaccaagtccacaccaaccactccagtcaaaacagagaagaagactgca
atagtaagtcaagagttcacccgaagtagagacagagggcatagcaacagtaaaccaagg
acaggctcttccaaaagtcgtgacgctagctgtagtagtgtgtcgtctacgcactcagct
ggatccaacagaactagtgtgaatggaggacagagaggatacaatagctatgataatcgc
atgaacagcaatcggaattctggccattacgacaatggaccttctaggaaaccatatcac
ggaggaagtgctcaaaataagaacggctacgaaggtggccgtgtgtacacgcggacgaac
agcagtaatagtagtaacaagaaaaaacggaacagtggacctggatacggttaccccaag
agggacagctattcaagtggcagcagtaatcgtaggtaa
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