KEGG   Crassostrea virginica (eastern oyster): 111135654
Entry
111135654         CDS       T09197                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
cvn  Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:cvn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cvn03036]
    111135654
   03400 DNA repair and recombination proteins [BR:cvn03400]
    111135654
Chromosome and associated proteins [BR:cvn03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    111135654
DNA repair and recombination proteins [BR:cvn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     111135654
SSDB
Motif
Pfam: MMS19_N MMS19_C HEAT_EZ PDS5 Tra1_ring
Other DBs
NCBI-GeneID: 111135654
NCBI-ProteinID: XP_022341626
UniProt: A0A8B8ENX3
LinkDB
Position
5:88796705..88841990
AA seq 1001 aa
MSAPIWKTEVEKYIKLSDNTAVEDLSNGLQGKSIALLELVENIGEYLTNEDHEIRGRVLK
LLGEVLSAIPHSVLSPLEVKTFVTYLTERLQDHHSVQPRALHALRTLVTGSGSSLPEGCA
EMICRAIFKEVQVQTLSQTDRCTVYNIYSTLLSHKLPELQKMETDFVYGFIQSMDTEKDP
RNLLIAFHCARTIILNFSLGPFVEEMFEVTSCYFPIDFTPPPNDEFQISREDLIRGLRGC
LSACPDFGPLCVPLLLDKLQSDVQSAILDSLLTLADSAVVYGSKCVKEFQGPLYRCIKQE
IFSPRSPELVSASESALSAMGAALSPQPGLSTENSDVDVFIKEVMQDSKRHFVDEDLRLF
GPSSRLLLALTQGSEHACCGVIHQTLPLLEDMYNKFTGANQRKQIIEMLVKFLCCSKRFD
GGKAAKVIRDLLPSSLKILMSSVSQSSVTLTSAAVEGLGQILSLPDALSSKDLETVCWCV
VDLALNSTDRKVRSSCVEPCKEIMKVYPQISSEILPKLVAKIDTDGDAILPFIAILAVHK
SVISRISEELLNKLQQESQAMSESALQTCLWITSCLNDISIYARGNSDCVPILSLEMVPA
VYQLCVSNAVSDNYSDILSSPDVLQTLSAFIRNTAILLDSRTFGKLYSFVTKVYCEATIG
DVKLQNPFAPLQTEAPPQQSCLVTLLTPVVCSCPKQFSIPDIEKYQDSLTDLSLRSNHDY
TRSEAAKCLSGILNRAPDDEDMAVYLQQRFDFYEKTMTFDSKATSCLQQCVWVTKALVMR
GHREASKFVNILLRLLGNEDLGEQAAEGVRTVLTLYEDVLNPTMHANIRLLYKQRFFTEN
SSPIIEGFQTASISTKKNYLMALSHCLQSLPQSVLLRELPQLFPLLVQSLLCDNIQLQQS
TMETLCTMITDAPDVIVKHIDTVIPQLLKLTAYKPVMRVRTCALRCLLGLVSLPTPVILP
YRPRVIKALEGVLDDKKRLVRLEAVKARNEWCLLGEPGGKS
NT seq 3006 nt   +upstreamnt  +downstreamnt
atgtctgcgcccatatggaaaacagaggttgaaaaatacattaaattatcagataatacg
gcagtggaggatttatccaatggattacaaggaaagtctatagctcttcttgaactggtg
gaaaatattggggagtatttgacaaatgaggaccatgaaatcagagggcgtgtcctaaag
ttgttgggggaggttctgagtgccatcccacactctgtgctctccccactagaagtgaag
acatttgtcacctacctgacagaacggcttcaggatcaccattctgtacaaccccgggct
ctccatgccctaagaaccctggtcactgggagtggatccagcctgcctgaggggtgtgca
gagatgatctgtcgagccatcttcaaagaggtccaggtgcagaccctgtcccagacagac
aggtgtacagtgtacaacatctactccacactcctctcccacaaactcccagagttacag
aagatggagactgactttgtttacggattcatacagtccatggatacagagaaggatccc
cgcaatctgctgatagccttccactgcgcacggaccatcatcctgaacttctctttaggt
ccctttgtagaagaaatgtttgaagtcacctcctgctacttccccatagacttcacacct
cccccgaatgatgagttccagatttcccgtgaggatctgatccgcggattaagaggctgt
ctatcggcctgtccagatttcggccctttgtgtgtccccctattactggacaagttacag
tctgatgtccaaagtgccatattggactcacttcttactctggcagacagtgcagttgtt
tatggttctaagtgtgtgaaggaattccaggggccgttgtacaggtgtatcaagcaagaa
atattcagtcctcgatccccagaactagtgtcagcatcagagtctgccctgtctgccatg
ggagccgccctatctcctcagcctggcctatcaactgaaaattcagatgttgatgttttc
atcaaagaggtcatgcaagacagtaagcgccactttgtggatgaggacttgcgtttgttt
ggtccctctagtcgtctcctcctggccctgacccaggggtctgaacatgcctgctgtggg
gtgattcaccagaccctacctttactggaggatatgtataacaaattcacaggggcaaac
caaagaaaacagatcatagaaatgctagtcaagttcttatgttgctccaaaagatttgat
ggaggaaaagctgccaaagttatcagagatttgcttccttcttcactgaagattctgatg
tcctcagtttcacagtctagtgtgaccttgacctctgctgctgttgaaggtctaggtcag
attctcagtttgcctgatgcactaagttcaaaggatctggagactgtgtgttggtgtgtt
gttgatctggcgttgaactcgacagatagaaaagtcaggagttcatgtgttgaaccatgt
aaagaaataatgaaggtctacccacagatttcttctgaaattttaccaaagttagtggca
aaaattgatacagacggagatgccattttaccttttatagccatacttgctgtgcacaaa
agtgtgatttctagaatatctgaagaattattgaacaaattacagcaagaatctcaagcc
atgtctgaatcagccctacagacttgtttatggatcacatcatgtttgaatgacatttct
atctatgccagaggaaattcagattgtgtacccattttgtctttggagatggtccctgct
gtataccaactctgtgtgtctaatgcagtgtctgacaattacagtgacatcctgtctagt
cctgatgtgttacaaacattgtctgcatttatcagaaacacagccattctgttagactca
aggacttttggcaaactctacagttttgtaaccaaggtttattgtgaagctacaatcggt
gatgtcaaactacagaatccatttgctcctcttcagacagaggctcctccccaacagtcc
tgtctggtgactctactcaccccagttgtctgctcctgtcctaaacagttttctatacct
gacattgagaaatatcaagatagcctcactgacttatcactaagaagtaaccatgactac
acaagatctgaagcggctaaatgtttgtctggaattctaaatagagctcctgatgatgag
gacatggcagtgtacttgcaacaaagatttgatttttatgaaaagaccatgacctttgac
agtaaagccacttcctgtttgcagcagtgtgtctgggtcaccaaggctcttgttatgagg
ggtcacagagaagcttccaagtttgtcaacattttactgaggctgctgggaaatgaggat
ctgggagaacaggcggcagagggagtgagaacggtgctaacattgtacgaagacgtcctc
aatcccacaatgcatgccaacatccgcctcctgtacaaacagagattcttcaccgaaaac
tccagtccaattattgagggattccaaacagcatctataagcacaaagaagaattatttg
atggccctgtcacactgccttcaatctctaccccagtctgtgctgctaagagaacttcca
cagttgtttcccctgttggtccagtccttactgtgtgacaacatccagttacaacagtcc
accatggagacactgtgtacaatgatcactgatgcccccgacgtcatcgtcaaacacatc
gacacagtcatccctcagcttctgaaactgactgcatacaaacctgttatgagggttcgg
acttgtgccctgcggtgcttgcttgggttggtgtctctccccaccccggtgattctgccc
taccgtccccgggtcatcaaggccctagagggagtcctggacgacaaaaaacgactggtc
agactggaggctgtgaaggccaggaatgagtggtgtctgttgggggagcctggtggcaaa
tcataa

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