Crassostrea virginica (eastern oyster): 111135694
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Entry
111135694 CDS
T09197
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111135694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111135694
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111135694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
eIF2A
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_ELP1_1st
Beta-prop_WDR41
PEP5_VPS11_N
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
111135694
NCBI-ProteinID:
XP_022341684
UniProt:
A0A8B8EP32
LinkDB
All DBs
Position
5:complement(60622695..60637107)
Genome browser
AA seq
948 aa
AA seq
DB search
MDDSGGVLTMPMQPLPPGQGYQTFQRPNARTFQRRGPPPDSKGGMPDGDNATGPVMFDGK
RMRKAVHRKTVDYNSAIVEYLENRVWQRDYRDMRAIQPDSLYQIDIPPPIAMTNNSMNCV
TTKFIRASTNKFRCPIFCLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDTSCRA
MQWSHNDNWMVTADHFGYIKYWQSNMNNVKMYQGHKEPIRGISFCPSDSKFATCSDDGTV
RIWDFMKCHEEKILRGHGSDVKCVDWHPQKSLLASGSKDNQQPIKLWDPKAGTSLATIHA
HKATVMELKWNKNGNWLLTASRDHLLKVFDIRNMKEEIQTFKGHKKEATAVAWHPIHEGL
FVSGGSDGAVMFWNMGLDREVGSMEEAHEGMVWSLAWHPMGHILATGSNDHSTKFWTRNR
PGDRMRDRYNLNTLPGGSEHELAEFDPDATAGPLIPGMGQIPSGPMLTNQEEEKAEVEDL
PAIPGLDWSADESFFKQQDQPKVPIKKIPYAKPIPWDFERAWMTNKLPNVEKEDLKGGRR
EKDWEDNNNRRDRRQRGKDRNRRNEEDWQEDDYNDEPMTPNNNFDKRMNSGQGPMGGPMG
NKPPGDTPQGRGQFNQGPMRPRDGMGNNGPQGNMNMPPNNMGPNMDSGGMMQGNMGPGGM
NMPPHGNFGNMNSGNIGGMNKMQFPGPDQRNMGPSQGPGPMNNPPRFQGNQGGQFGPPDS
FGGMNNMQGNQWRQNRNPPDNFGGGQDNFPGDNDYRTDVDFRQDNQTPQSFRGGRGGRGG
RFQNNRGDQDDHWNDNSGQQWRNDNNMQENWGPGGGGGGNFNMENEPMYDQNFGGNMGGG
GGGGGGRGGRGRGGGGWNDRRGGGGAGRGNRNDGNFNQQDMFNRKRNWNQGPGDSDFNSG
GPRNSGFGGGGGPQGGGWSDDHNSGGRGRGRGNRGNRGFRGGRRGGMS
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctggaggagtacttactatgcccatgcagcccctcccaccggggcagggc
taccaaacattccagcgtcccaatgctcgaaccttccagagaaggggcccaccccccgac
tcaaaagggggaatgccagatggggataatgcaacgggcccggtcatgtttgacgggaaa
aggatgcggaaagctgttcacaggaaaacagtggattacaactcagctattgttgagtat
ttagagaacagagtttggcagagagattacagggatatgagggcaattcagccagattct
ctgtaccagattgatatccccccacccattgccatgacgaataactccatgaattgtgtg
actacaaagtttattagagcatcaaccaataaattcagatgccctatattctgtttggct
tggacaccagagggcaggagactggtgaccggggcctccagtggggaattcacactgtgg
aatggccttactttcaattttgaaactattctacaggctcatgatacgtcatgccgtgcc
atgcagtggagccacaacgacaactggatggtgacggccgaccattttggctacatcaag
tactggcagtccaacatgaacaacgtgaaaatgtaccaaggccataaggagcccatacgg
gggataagtttttgcccgtcggatagtaaatttgccacctgttctgacgacggaacagtt
cgaatttgggacttcatgaaatgtcacgaagaaaaaatcctcagaggacatggatctgat
gttaaatgcgtcgactggcatccacaaaaatctttattagcctcgggaagtaaagacaac
caacaaccaatcaaattgtgggatcccaaagctggaacaagcctcgccacaattcatgca
cataaagccaccgtcatggaactcaagtggaacaagaatgggaactggctgctcacggct
tcaagagaccacctgctgaaggtgttcgatatccgcaacatgaaagaggaaattcagaca
ttcaaaggccacaaaaaagaagctacagctgtggcctggcaccccatacatgaaggattg
tttgtcagtggtggatccgatggggcggttatgttctggaatatgggacttgatagagag
gttggatcaatggaggaagcacatgaggggatggtgtggagcctggcctggcatcctatg
ggtcacatcctggcgactggctccaacgaccattccacgaaattctggacgaggaatcgt
cctggggacaggatgagggacagatataacctgaacacgttacctggggggtcagagcac
gaactggccgagtttgaccccgatgccacagctggtccactcattccaggaatgggtcaa
attcccagtggaccaatgttgaccaaccaagaggaagaaaaagcagaggttgaagacttg
cctgctattccgggattggactggtcagcagatgaaagcttcttcaagcagcaggatcag
cccaaagtaccaatcaaaaagatcccctacgctaagccgatcccctgggactttgagcgg
gcgtggatgaccaacaagttacctaatgtagagaaggaggacctcaaaggagggcggcgg
gaaaaagactgggaggacaacaacaaccggagggacaggcgccagcgcgggaaagaccgc
aacagaagaaatgaggaagattggcaggaagatgactacaatgacgagcccatgactccc
aacaataactttgacaagcggatgaattcaggtcaagggcccatggggggaccgatgggt
aacaagccccccggggacacaccccagggcagaggccagttcaaccaaggaccaatgcga
cccagagatggaatgggcaacaatggtccacaaggaaacatgaatatgccgccaaataac
atggggccaaatatggactccggaggcatgatgcagggcaatatgggcccagggggaatg
aatatgccaccacatggaaattttggcaacatgaattctgggaacattggaggaatgaat
aagatgcagtttcctggccctgaccagagaaacatgggtcctagtcaggggcctggtcct
atgaataacccacccaggttccaaggcaatcaaggtggacagtttggaccccctgattcc
tttggagggatgaataacatgcaaggaaatcaatggcggcagaacaggaaccctcccgac
aacttcggtggagggcaggataattttcccggggacaatgactaccgcacggatgtcgat
ttccgacaggacaaccagactccacaaagtttccgtgggggaagaggtgggagaggtgga
aggttccaaaacaataggggtgatcaggatgatcattggaacgacaactcaggacagcag
tggagaaatgacaataacatgcaggagaactgggggccagggggtggtggtggggggaac
tttaacatggagaacgaacccatgtatgatcagaactttggggggaacatgggaggggga
ggaggaggaggagggggtaggggtggcagggggagaggtgggggcggatggaatgacaga
cgaggaggagggggagcgggcaggggaaatcgtaacgatggcaactttaatcaacaggac
atgttcaatcgcaaaagaaattggaatcaaggaccaggtgatagtgactttaacagtgga
ggaccacgtaatagtggattcggtggaggcgggggcccgcaaggagggggttggtcagat
gatcacaattcaggggggagagggaggggcagggggaacaggggaaacagaggcttcaga
ggggggagacggggcggcatgtcatag
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