Crassostrea virginica (eastern oyster): 111135723
Help
Entry
111135723 CDS
T09197
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03020
RNA polymerase
cvn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111135723
09124 Replication and repair
03420 Nucleotide excision repair
111135723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111135723
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111135723
Enzymes [BR:
cvn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111135723
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111135723
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111135723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
111135723
NCBI-ProteinID:
XP_022341735
UniProt:
A0A8B8EP80
LinkDB
All DBs
Position
5:complement(88233595..88243860)
Genome browser
AA seq
646 aa
AA seq
DB search
MPLPAKGTILLERTNAKLSLEGDVAVSILMFFYCLATEVVLFNESGQCCGSGGAPDPDGL
SLCGIPALPHTGVSGGVEHGGGGSLCYTGYIFLLPIFNATKIFVNGCWVGIHRDPEQLMN
TLQKLRREMNIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKQSHIKQFKQ
REYNSYSWQDLVASGVVEYIDPLEEESIMLAMTPDDLSDKDIQYCSTYTHCEIHPAMILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMSVYITNFHVRMDTLAHGLLYPQKPLVTTRSME
YLRFRELPAGMRQAVYDKLDEDGIISPGIRVSGDDVLIGKTLTLPANEDELEGTTKRFTK
RDASVFMRRSETGIIDQVIITLNQEGYKFCKIRVRTVKTPQIGDKFASRHGQKGTCGITY
RQEDMPFTCEGITPDIIINSHAVPSRMTIGHLIECLQGKVAANKGKIGDATPFNDAVNVQ
KVSNLLHQYGYHQRGNEVLYNGFTGRKLNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQI
LNRQPMEGRARDGGLCFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNFCGLIAIAN
LRNQTFECRGCKNKTQISQIRIPYACKLLFQELMSMSIAPRMMVLG
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttccggcaaaaggcaccatactcttggagagaaccaatgctaaactgtcctta
gagggggatgtagcggtcagtatattgatgttcttctactgcctcgccactgaagttgtc
ctttttaatgaatcggggcagtgctgtgggtctggtggagcacctgaccctgatggccta
agtctctgtgggatcccagccctcccccatactggagtttctggaggagtggagcatgga
ggaggtggctccctctgctatactggatatatctttttactgcccattttcaatgccaca
aagatctttgtcaatggttgttgggttggaattcatcgggaccctgaacagctgatgaac
accttgcaaaagttaagacgtgaaatgaacatcattgtatctgaggtgtccatgatcagg
gatattagagacagggaaattcgaatctacacggatgctggtcgtatttgtcggccattg
ttgatcgtagaaaaccagaagttgctgttaaaacaaagtcacatcaagcagtttaaacag
cgagagtacaacagctacagctggcaggacttggtggccagtggggtggtggaatatatt
gaccccctggaggaggagtctatcatgctggccatgacccctgacgacctctcagacaag
gacatccagtactgttccacctacacacactgtgagatccaccccgctatgatcctagga
gtgtgtgcctccattattcctttccctgatcacaaccagtctccccgtaacacctaccag
tctgctatgggtaagcaggccatgagtgtctacatcaccaactttcacgtgcggatggac
acactggcccacggtctgctctacccccagaaacccctggtcaccacccgctctatggag
tacctacgcttccgagagctccctgcaggtatgcggcaagctgtgtatgacaaattggat
gaggacgggattatctcccctggaatcagagtatcaggggatgatgtgctgatagggaag
accctgacactgcctgccaatgaagatgagctagagggcacaaccaagagattcacaaag
cgtgacgcaagtgtgtttatgcggcggagcgagaccggcatcatcgatcaagtgataatt
actctgaaccaggagggctacaagttctgtaagattcgcgtccgcacagtcaagaccccc
cagattggggacaagtttgctagtcgtcacgggcagaagggtacctgtggaattacctac
agacaggaggacatgcctttcacctgtgagggcatcacccctgacatcatcatcaactcc
cacgccgtgcccagtcgtatgaccattggtcacttgattgagtgtctccaggggaaggtg
gctgccaacaaaggcaagataggtgacgccacgcccttcaatgatgctgtcaacgtacaa
aaagtctccaacctactgcatcagtacggttatcaccagagaggaaatgaggttctatac
aacggtttcacgggcaggaagctgaatgcccagatcttcctgggtcccacctattaccag
agactgaagcacatggtggacgataagatccactcccgagccagagggcccctgcagatc
ctgaaccgacagcccatggagggaagagccagagatggagggttatgttttggtgagatg
gagcgagattgtcagattgcccatggagctgcccagttcctgagggagaggctgtttgag
gcctctgacccatatcgagtccacgtgtgtaatttctgtggtctcattgccatagccaac
ctccgcaaccaaacatttgaatgcagaggctgcaaaaacaagacacagatttcccagatt
cgtattccgtacgcctgtaagctgcttttccaggaactgatgtccatgagtattgcaccg
cgtatgatggtcttgggctga
DBGET
integrated database retrieval system
