Crassostrea virginica (eastern oyster): 111135799
Help
Entry
111135799 CDS
T09197
Name
(RefSeq) replication factor C subunit 4-like isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03030
DNA replication
cvn03410
Base excision repair
cvn03420
Nucleotide excision repair
cvn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111135799
03410 Base excision repair
111135799
03420 Nucleotide excision repair
111135799
03430 Mismatch repair
111135799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvn03032
]
111135799
03036 Chromosome and associated proteins [BR:
cvn03036
]
111135799
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111135799
DNA replication proteins [BR:
cvn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111135799
DNA Replication Termination Factors
ELG1-RFC complex
111135799
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111135799
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111135799
Check point factors
HRAD17(Rad24)-RFC complex
111135799
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_assoc_2
AAA_lid_RFC1
Rad17
DNAX_ATPase_lid
AAA_30
AAA_24
AAA_16
AAA_11
AAA_19
Gp44_lid
DUF815
Cdc6_lid
ResIII
ATPase_2
ASL_C
RuvB_N
SLFN-g3_helicase
AAA_7
Mg_chelatase
Cdc6-ORC-like_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
111135799
NCBI-ProteinID:
XP_022341884
UniProt:
A0A8B8EPM4
LinkDB
All DBs
Position
5:complement(65790311..65804881)
Genome browser
AA seq
383 aa
AA seq
DB search
MLIRHEDYQGHRYLWINWAHKKVMHPFFKPREAGTTSKDPKPQETLGAGKGGKGKQRHIP
WVEKYRPRSVEDVAYQDEVVAVLKKSLERSDLPNLLFYGPPGTGKTSTILAASRSLFGTD
MMKLRVLELNASDERGINVVREKVKKFAQTTASGTRPDGKPCPPFKIIVLDEADSMTGPA
QAALRRTMEKESKSTRFCLICNYVSRIIEPIASRCAKFRFKPLADQILTERLQGICEAEK
ITYDKEAIKALIDTSEGDMRKAITCLQSAARLKGQEEVTKEDVYEIAGVIQEDTITNLIK
VCHSNSYEKLEKMVQEVMYQGHSASQIITQLHDKVVQLDDINDQQKSVICEKLAVVDKCL
MDGADEYLQLMALFTTMMRAICC
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcagacatgaggattatcaggggcatagatacctttggatcaactgggctcat
aaaaaggtcatgcatcccttcttcaaacctagagaagcaggtacaacctctaaagatccc
aaaccacaggaaacgctaggagccggaaagggagggaaagggaagcagaggcacatcccc
tgggtggagaaataccgtccccgttcagtagaagatgtggcttatcaggatgaagtggtt
gcggtgctgaaaaaatcccttgagagatctgaccttccgaacctcttgttctatggacct
ccgggaactgggaaaacctccaccattttagcagcctcaagatctctgtttgggacggac
atgatgaagttgcgtgtcctggagttgaatgcctccgatgaacggggaataaacgtggta
cgagagaaagtgaaaaagtttgcccagactacagctagtggaaccaggcccgatggtaag
ccctgtccaccctttaagatcattgtcctggatgaggcggattccatgacaggcccggct
caggctgcactcagaagaacgatggaaaaagagagtaaatccacccgcttctgtctgata
tgtaattatgtcagccgaatcatcgaacccatcgcatcccgctgtgccaagttccggttc
aaacccttagctgatcaaattctcacagaaagattgcaaggaatttgtgaggcagaaaaa
ataacatatgacaaggaggccataaaagccctcattgacacgtcagagggggacatgagg
aaggccatcacctgtctgcagtctgctgcccgactgaagggtcaggaggaggtcaccaag
gaggacgtctacgaaatcgcaggggtgatacaagaagataccattactaatctaatcaaa
gtctgccattccaactcctatgaaaaactagaaaagatggtacaggaggtgatgtaccag
ggccactctgcctctcagatcatcacacagctccatgacaaagtggtacaactggacgac
atcaacgaccagcaaaagtctgtcatctgtgaaaagctcgccgttgtggacaaatgtttg
atggacggtgcggacgaatacctgcagttgatggcccttttcaccactatgatgagagcc
atctgttgctga
DBGET
integrated database retrieval system
