Crassostrea virginica (eastern oyster): 111135819
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Entry
111135819 CDS
T09197
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111135819
03016 Transfer RNA biogenesis [BR:
cvn03016
]
111135819
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111135819
Spliceosome [BR:
cvn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111135819
Transfer RNA biogenesis [BR:
cvn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111135819
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111135819
NCBI-ProteinID:
XP_022341904
UniProt:
A0A8B8EPP5
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All DBs
Position
5:complement(60703774..60789536)
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AA seq
732 aa
AA seq
DB search
MTAFEEMGVMPELGQAVEEMDWSLPTDVQAEAIPMILGGGDVLMAAETGSGKTGAFCLPI
IQIVYETLRDQQEGKGSKLSNHHSGHPHSSHWRMNPYDRGDAMAIDPEGLLCQARDAQGW
HGTRSNKAVVGGGKYYYEATVTDEGLCRVGWSTDKATLELGIDKFGFGFGGTGKKSWGKQ
FDSYGEAFGINDTIGCYLDLDKMEIKWSKNGVDLGKAYDIQPHLKNDRFYAALTLKNAEM
KFNFGDTPFKYPPQGGFKALSSAPPDNVVQSRIVASGAVNAKPAPNAPQAIIIEPSRELA
DQTFNQIQKFKVHLSHPTIRELLIIGGVNVRDQVDVLETGVDIVVGTPGRLEDLISTGKL
ALHQCRFFVLDEADGLLSAGYGDMINRLHQQIPKVTADGKRLQMIVCSATLHSFDVKKMA
EKLMYFPTWIDLKGQDAVPETVHHVVCDVDPEVDTRWKSLKHYIDTDGVHQNDKVSPNNT
SKETYSEAVKILKGEYVIQALEEHKMDKALIFCRTKLDCDNLEKYLQQRGGGKYSCVCLH
GDRKPQERKANLQKFKDNKVRFLICTDVAARGIDISGLPYVINVTLPDEKQNYIHRIGRV
GRAERMGLAISLVATVKEKVWYHSNCNSKGRGCYNTNLTDYGGCCIWYDEPKLLSDVQEH
LDITIDKVDPSMKVPLNEFDGKVTYGQKRKNTGGAYAGHVASLAPAVKELAELEKRAQTS
FIDLKYKKFAQR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgtttgaagaaatgggtgtcatgccagaacttggacaggcagttgaagaaatg
gactggagtttgcccaccgatgttcaagcagaggccattccaatgattttaggaggtgga
gatgtgctaatggctgcagagacaggaagtggaaaaacaggggcattctgtttacccatt
attcaaattgtgtatgaaacactgcgagatcaacaagaaggaaaagggagcaaactctcc
aatcatcactcaggacaccctcatagttcccactggcgtatgaatccttatgacagagga
gatgccatggccatagatccagaggggctactgtgtcaggccagagatgcacagggttgg
catggtaccaggagcaacaaagcagtagtcgggggaggaaagtattactacgaggccaca
gtgacagacgagggactgtgtcgagtggggtggtccacagataaagccacactggaactc
ggaatagacaaatttgggtttggatttggaggaacggggaaaaaatcctggggcaaacag
tttgacagttatggagaggcttttggcatcaatgataccattggctgttatctggaccta
gacaaaatggagatcaagtggtcaaaaaatggtgttgatcttggaaaagcctatgatatc
cagcctcacttaaagaatgacagattttatgctgcattgactcttaagaacgccgaaatg
aaattcaattttggagacactcccttcaaatatccacctcagggtggtttcaaagcattg
tccagtgcacccccagataatgttgtacagtctagaattgtagcctccggtgccgtgaat
gcaaagccagcccctaatgcccctcaagccatcataatagagccctcaagagaacttgct
gaccagacctttaaccagatccagaaattcaaggttcatcttagccaccctactatcagg
gagcttcttatcattggtggtgtcaatgtaagagatcaagtggacgtattggaaacaggg
gtggacattgtcgtgggaactcccggtcgactggaagatctgatctccaccggaaaactg
gccctacaccagtgcaggttcttcgtactagatgaagcggatggattgttgtctgctggg
tatggtgacatgatcaacagacttcaccagcaaatccccaaggtcacggccgacggcaaa
cgcctgcagatgatcgtctgctctgccaccttgcactcattcgacgtcaagaaaatggcc
gagaaattgatgtacttccccacctggatcgacctgaaagggcaggacgctgtgcctgaa
acagttcatcatgtggtttgtgatgtggatccagaagtggacacccgctggaaatcactc
aagcattacattgacactgatggggtacaccaaaatgacaaggtctcacccaacaacaca
agtaaagaaacttactctgaagcagtgaaaattctgaagggggagtatgtcattcaagcc
ctagaggaacacaaaatggataaggccctgatcttctgccgaaccaagttagactgtgat
aacctggagaaatacctacagcagagagggggaggaaagtattcttgtgtctgtttgcat
ggcgacaggaaaccacaggagaggaaggccaatttacaaaagtttaaggataacaaagtt
cgtttcttgatatgtacggacgttgctgctcgaggtattgacatcagtggcttgccatat
gtcattaatgtgacattacctgatgaaaaacagaactatatccatcgtattggcagagtc
ggaagggctgaaagaatgggtcttgcaatatctctggttgccactgtgaaggaaaaggtg
tggtaccactcgaactgtaactccaaggggcggggctgttacaacacaaacctgaccgac
tacgggggctgctgtatctggtacgacgaacccaagttgctctccgatgtacaagagcat
ttagacattaccattgacaaggtggatccgagcatgaaagtcccgcttaatgagtttgac
gggaaagtaacctatggacagaagcgcaagaatacaggtggagcatatgcaggacatgtt
gcctctttagcacctgccgtgaaggaactggcggaattagagaagagagcacagacctcg
ttcatcgacttaaagtacaaaaagtttgcccagcgttga
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