Crassostrea virginica (eastern oyster): 111135880
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Entry
111135880 CDS
T09197
Name
(RefSeq) ubiquitin conjugation factor E4 B-like
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn04120
Ubiquitin mediated proteolysis
cvn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111135880
04120 Ubiquitin mediated proteolysis
111135880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvn04121
]
111135880
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111135880
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
U-box type E3
111135880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
MoaF_like
Lipid_DES
SNaCT8
Motif
Other DBs
NCBI-GeneID:
111135880
NCBI-ProteinID:
XP_022342025
UniProt:
A0A8B8EQ13
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All DBs
Position
5:37570874..37581661
Genome browser
AA seq
1105 aa
AA seq
DB search
MSELTPDEIRRRRLARLAGNSSSGSQNDGSPNQSQASGGSSQASDSQSTPSRTNSTPPSS
LNVEPVTPDSQRSLDMDSECSEKNLQSQMDVDSGIETMEVDDQDVKFEIKRRRDTSIGSE
ATVEQVTEAVSRVFLVSWKEDTEEAVYLPQLAECEEEGDSKEMINQALMEVLLKIRDNPE
NPVLKIRPNFSYSASPKKAGSSPRSVGTMMSPDMQPKREFSARYQPENCKEVEMINYLID
CYDRAGLEERLAPKKASVPPLSLMLSSARQQCVCHTALVLQGGLTTPRSIGGTSLLVSYL
LSHNLPRGFLPELVHTTCDDSDTFRRVFIPVLQGLNRLIHGLSLDGDDYRDPLSVLSELC
EIKSGNTRPICGLVVELSNWIPTTLTKATGMELEKLSWLGPFLGLSVFAEDNTKVVEKFF
SGHQLSADNTRLIHQSLQHGMEYVRSELFKIMHNILVNGQSRDLALSYIATALERNAKKS
QIQVDERYVAGDGFMLNLLSVLQQLSVKITLDKVDTYYPFHPNSRVGIKSETRLKALPQQ
AEKWIKDLSKGTPPWQDPKFPTECFFLTLHCHHLSIIPAVRRYQRRIRAIRDLNRMVEDL
ENTESQWSQFPHAARNKEMLKKWKSQVQRLQKSKLCADAAILDESLLRRCLNFYSGLSMY
LLKVADPQNMGQTLPLPKHVPMPFGALPDFYLEDIADFLLFVIQFSPDVLNDPCMTQIVH
MLIVMVCNNEYIGNPYLTAKLVEVVFVMNPSVQRRTGTLNEQFLLHPLALKHLVPALMNF
YTEIETTGASNEFYDKFSIRYHLSIIFKSMWQTPQHQLNMIEEADNGKQFVKFVNMLMND
TTFLLDESLDCLKRIHEVQEAMQNTEEWERQPKDQQQSRQRQLAMDERQCRSYLTLATET
VDMFHYLTEKIRKPFLKPELADRLAAMLNFNLQQLCGSKCKNLKVKNPEKYGWEPKELLN
RLTDIYLHLDCDEFATAIANDERSYRHELFNDAIARMQKAMIKTNVEIEKFRFLQEKVDK
IVLEKQQEEIDYGDIPEEFKDPLMDTLMADPVVLPSGTIMDRPIITRHLLNSQTDPFNRQ
PLTEEELKPANDLKLKIEAWRQSKR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaactgactccagacgaaatccgacgacggaggcttgccagattggctggtaat
tcatcatcaggttcacagaatgatgggtcacctaaccagtcacaagctagtggagggtcc
agccaagcatcagactcacagtctacaccatctagaacaaatagcacaccaccaagcagt
cttaatgtcgaacctgtaactcctgattctcagaggagcttggacatggattcagagtgt
tcagaaaagaatttacagtcacaaatggatgtagattctggaattgaaacaatggaagtt
gatgatcaagatgtgaaatttgagatcaaaaggagaagggataccagcattggttcagaa
gctactgtggaacaagtgactgaggctgtaagtcgagtttttcttgtgtcatggaaagaa
gacacagaggaagcagtgtacttaccccagctagcagagtgtgaggaagaaggtgatagt
aaggaaatgataaatcaagccttgatggaagttctcctgaaaattagagacaacccagag
aatcctgtattgaaaattcgccccaatttttcttattctgcatcaccaaagaaagctggt
tcaagtccaagaagtgttggtactatgatgtcaccagatatgcagccaaagcgagagttt
tctgccaggtatcaacctgagaattgtaaagaggtggagatgatcaactacttgatagac
tgttatgacagagctgggctagaggagagactggctcctaagaaagccagtgtccctccc
ttgagtttgatgctgtccagtgccaggcagcagtgtgtgtgtcatacagcactagttcta
cagggagggcttactacacccagatctataggaggcacctctctgctagtgtcctattta
ttgtctcacaacttaccccgtggctttctcccagaactggtacacaccacctgtgatgac
agcgacaccttcagaagggtgttcatcccagtgttgcagggtttgaatcgactgattcac
ggtctgtccctggatggggatgactacagggatccgctctccgtcctctcggagctgtgt
gaaatcaagagtggcaacacacgccctatatgtggactggttgtagagctttctaactgg
atccccactaccctgaccaaggccacgggaatggagctggagaaattgtcctggctagga
ccattcctgggactctctgtatttgctgaggacaataccaaagttgttgagaagtttttc
tctggtcaccaactgtctgcagacaacactcgacttattcaccagtccttgcagcatggc
atggaatatgtcagatcggagctattcaaaatcatgcacaatattctagtcaatggacag
agcagagatctagcattatcttacatagccactgccctggaaagaaatgccaaaaaatct
cagattcaggttgatgagagatatgttgctggagatggattcatgctgaatcttctgtcc
gtcctacaacaactgtctgtgaaaattacacttgacaaggttgacacatactatccattc
catccaaactcccgggtgggcattaaatctgaaactcggctgaaggctcttccccaacaa
gcagaaaaatggatcaaagacttgtcaaagggaacacccccttggcaggatcctaaattc
cccacggaatgctttttcctgaccctgcattgccaccacttgtcaatcattcctgctgtt
cgccgatatcagcgccgtatacgtgcaataagggatctaaacagaatggtggaggatcta
gaaaatacagaatcccagtggagccagttccctcatgctgcaaggaacaaagaaatgttg
aaaaagtggaaatctcaagtccagagactgcagaaaagtaagctctgtgccgatgctgct
attctggatgagtcgttgcttcgacgctgtttgaatttctacagtggcttatctatgtat
ctgttgaaagttgcagaccctcagaatatgggtcaaactttgccattgcccaaacatgtg
ccaatgccatttggagctttgccagatttctacttggaggacattgctgatttccttttg
tttgtcatccagtttagtcccgatgttttgaatgacccctgtatgacccagattgtccac
atgctgattgtgatggtgtgtaacaatgagtacatagggaacccttacctgaccgctaag
ctggtggaggtggtcttcgtcatgaaccctagtgtccagcgcaggactggaactctcaat
gaacagttcctactgcaccctctggccctcaaacatttagttccagctctgatgaacttt
tatacagagattgaaaccacaggagccagcaatgaattttatgacaagttctccatccgt
taccatctcagtatcatattcaagtccatgtggcagactccacaacatcagctgaacatg
atagaggaggctgacaatgggaagcagtttgtgaagtttgtcaacatgttgatgaatgac
accactttcctgctggatgaaagtctggactgtctgaagcggattcatgaggtccaggaa
gccatgcagaatacagaggagtgggaaagacagccaaaggatcagcagcagtcccgacag
agacagcttgccatggatgagcgacaatgcagatcttacctcacacttgccactgagaca
gtggacatgttccactacctcaccgagaaaatcaggaaacccttcctcaaaccagaacta
gcagatagactggctgcaatgttgaatttcaacctgcaacagctctgtggttcaaaatgc
aagaacctaaaggtgaagaaccctgagaaatatggctgggaacccaaggagttgctcaac
cgattaacagacatctacctacacttagactgtgatgaattcgctactgctatcgccaat
gacgagaggtcttatcgccatgaacttttcaatgatgccattgctagaatgcaaaaggct
atgatcaaaactaatgtggaaatagaaaaattccgctttctccaggaaaaagtggacaaa
attgtgttggaaaagcagcaggaagaaattgactatggggatataccagaggagtttaaa
gatcccctgatggatactttaatggctgatccagtcgttttgccgagtggcaccattatg
gatcggccaatcatcaccaggcatttgctgaactctcaaacggatcccttcaacaggcag
cccttaacagaggaagaactcaaaccagccaatgatctcaagttgaagatagaagcgtgg
aggcaatcaaagagataa
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