Crassostrea virginica (eastern oyster): 111136085
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Entry
111136085 CDS
T09197
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111136085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvn03000
]
111136085
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111136085
04121 Ubiquitin system [BR:
cvn04121
]
111136085
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111136085
Transcription factors [BR:
cvn03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
111136085
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111136085
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111136085
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111136085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Torus
zf-UDP
Vasculin
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
111136085
NCBI-ProteinID:
XP_022342397
UniProt:
A0A8B8ER56
LinkDB
All DBs
Position
1:17123819..17138643
Genome browser
AA seq
675 aa
AA seq
DB search
MSSEEPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKQYPEDPA
EFKPLTEDELQRIRKERKQKDLQRKQKAAENRKHLANVRVVQKNLVFVVGLSKKLADPET
LKKQEYFGKFGKIHKVVINQSTSYAGSQGPSASAYVTYNRCDDALKAILAVNNVHVDGRT
LKASLGTTKYCSHFLRGAQCQKQDCMYLHELGEEAASFTKEEMQMGKHQEYEQKLLEQYM
NSQNTANSQMNCSKSIPIQKKTSSPITVTTPSETPPTPTQTHSPQSVTPPTNSSPPNTSN
KEAWPCLQQGKPDSKPDGRQPNHKPDISKPNHRHLTDVENSSSQKPTEPPVCTAGPPFKP
PPRLPLGMGLKPFENPATSLSLFSGNGFHRNQKIPVPTHTEVPDVPTTEIADSIPVSSCE
DWQAAFGFSSKSRDNQDDDLGFDPWDESSKGLADLLEKENSTQSLQHQRTSFSQTNPQNL
PPGFSLSHIQQQQQQHAQHPAFLRQDLVGSRMMNFLQPPPMYSSLNTENQDSHKVPTQND
VFSTKDWQDGLRALLPNINISFGAPPSNPATKSNHQPQKKWGVSTSSQSWMTNDPAILSS
GSLANNGISDGAPHWLKSIHQLTEVESSPFMQHFPPRNSYSAGWPTTQNPPPGFQSTAHP
TAQHPEPHKISEGLQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagaagaaccagttgagtgtccattatgtatggaaccgctagaaattgatgat
atcaatttctttccatgtacttgtggatatcagatttgcagattctgttggcacagaatt
cgaacagatgaaaatggactttgtcctgcctgcagaaagcaatatccagaggatcctgca
gaattcaaacccttaacagaggatgagttacagagaataagaaaagaaagaaaacagaaa
gatctgcagaggaagcaaaaggctgcagagaatagaaaacacctcgctaatgtcagagtg
gtgcagaagaacttggtatttgttgttggtttatctaaaaaactagcagatccagagacg
ttaaaaaagcaagagtactttgggaagtttggaaaaattcataaagttgtgataaatcaa
agtacttcatacgctggatcacagggtccaagtgcaagtgcttatgttacgtacaatcgc
tgtgatgatgcgctgaaggcaatcctggctgtgaacaatgttcatgtggatgggaggact
ctgaaagcttctctaggaacaacaaaatactgtagtcactttttgagaggagcgcagtgc
caaaaacaagattgtatgtacttgcatgagctaggtgaggaagcagcaagttttaccaaa
gaggaaatgcaaatgggtaaacaccaagaatatgaacaaaaactgttggaacagtacatg
aattctcagaacaccgcaaatagccaaatgaattgtagtaaatcaattcccatacagaag
aaaacatcttcaccaattacagtaaccacaccgtcagaaacacccccaacccccacccaa
acacactcccctcagagtgtcactcccccaaccaattcctctccccctaacacatcaaac
aaagaggcctggccatgtctacaacaaggaaaacccgacagcaagccggatggcagacaa
ccgaaccacaaacccgacataagtaaacccaatcacagacacttaacagatgtggaaaac
agttcttcacaaaagccaacagagccccccgtatgcacagcaggacctccctttaaacca
ccccccagactaccactagggatgggtcttaaaccatttgagaatccagctactagtctt
tcactctttagtgggaatggttttcacagaaatcaaaaaattcctgtaccaacacacaca
gaagttcccgatgttcctacaacagaaatagcggactcaatcccagtctctagttgtgaa
gattggcaagctgcatttggattcagttccaaatctcgagataatcaggacgatgaccta
ggttttgatccatgggatgaatcatccaaaggtttagcagacttgttagaaaaggaaaac
tccacacaatctttacaacaccaaagaacaagtttttcccagacaaatccacaaaattta
cccccaggtttttcactaagccatatacagcaacaacagcagcaacatgcacagcaccca
gcattcttaagacaagatctggtgggaagtcgtatgatgaattttctacagcctcctccg
atgtacagttctttaaacacagaaaatcaagacagtcataaagttccaactcagaatgat
gtatttagtacaaaagactggcaagatggacttcgggcattattaccaaatattaatatc
agctttggtgctccaccttcaaacccagcaaccaaatctaatcaccagcctcagaaaaag
tggggggtttctacttcttcacaaagttggatgacaaatgacccagcaattctatcctct
ggatctctcgcaaataacggaatatcagatggtgctccccactggttgaaatcaatccat
cagctaacagaagtggaaagctctccattcatgcagcatttcccccctagaaattcatat
tctgctggttggcccactacacagaaccctccccctggatttcagtctacagcccaccct
accgcacagcatccagagccacacaaaatatcagaaggtctacagtaa
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