Crassostrea virginica (eastern oyster): 111136115
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Entry
111136115 CDS
T09197
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111136115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111136115
03036 Chromosome and associated proteins [BR:
cvn03036
]
111136115
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111136115
Coactivators
SAGA/TFTC/STAGA complex
111136115
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
111136115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
111136115
NCBI-ProteinID:
XP_022342444
UniProt:
A0A8B8ER72
LinkDB
All DBs
Position
5:complement(48094157..48106774)
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AA seq
929 aa
AA seq
DB search
MRNSVQVVLWSEMATSNSLDDIFSTEIDENAVNALVGSLETQLASTTHKDTALSISDASM
NNNHISNASAPIACTSSVYLHSIPTSASKNMTIQNNVALNNANISHLKVSQSESQLLGLN
SIVSNVNSSEGGDQSVNANNINRNSPVPVNHVRIVSQSPNITNSRNSPSPSVTGHLNNVS
VPSSTPNQIVINNGQGLPNVNSTVNSASSANFNAIDHKPVIRGTHSSPLNKNSSQDVKPG
PTQIVNLKHEPVGSPQTGVYNVKQETGSPSSGFGVKQEHQLAIQPVPGAPQNVPHPSVHV
VQGKGPLTGNPSVITVRTPGQTHPSQVIMQPQIITTQSSSAQMHVVSVSGCTVSTRPTGT
VQVTHGKNINPRMATAAHFRPQQISIAPRPGTTPNTIALPPGVQIPPGAQLVRNEQGQLV
FVIQQPAVTSAATGHRMFVRPTSSPGPVRPHQIVTIQPPNSITQQGIPRQVTLSTVNTAS
PVPNLVRTTTQGTALHTTSSGAPQQPPDNVKKCKNFLSTLIKLAQSQPQQTVKNVRELIQ
GLIDGKVEPQTFTEKLQIELRSSPQPYLVPFLKKSLPALRQALIANTMTIDGVKAPPLEV
LQPMVSMATLVHHQGPLHPSTQPAALRGQHVIGIPKTVTAISGKSPHLPGVAGMPGSSHS
RSSTPHKEKTKYDSLKDDDDINDVATMGGVNLSEESKNILASNADFIGTQIRSCKDEAFL
YHCPLLGRITAIAKKHGLDDVSSDVANLVSHATQERLRDLLEKLDTIAEHRIEIFKMNER
FEPSTDAKSQLKFLEELDKLEKKRHDDQEWEKIMKAAKSRSKNEDPEQQKIKQKAKELQQ
AEIERMRQEEANQTALAAIGPRKKRKTDFGEISTSGSGGLNVSNGGNLSAKTASARQRIK
RVTLRDVLFLMEQERSLSKSTLLYKTFLK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattcagttcaagttgtgctgtggagtgaaatggcgaccagcaactctctcgac
gatattttctcaacagaaatcgacgagaatgctgttaatgctttagttggttcgttggag
acacagttagcatccacaacacacaaggacactgcactttctatttctgatgcttctatg
aacaataaccatataagcaatgccagtgctccgatagcatgcacttcttctgtgtattta
catagcatcccaacatcagcttcgaagaatatgacaattcaaaataatgtagcattaaat
aatgcaaacatatctcatctaaaagtatctcagtctgagtctcagttactaggtttgaat
tctattgtatcaaatgtgaattccagtgaaggaggtgatcaatcggttaatgcaaacaat
atcaatcggaactcgccagtgcctgtgaatcatgtaagaattgtttcccagtcaccgaat
attacaaattctcgtaattcaccatcaccatcagtgacaggacaccttaacaatgtaagt
gttccctcatcaacaccaaaccaaattgtgataaacaatggacaaggtttaccaaatgtg
aacagtactgtgaattctgcaagtagtgctaatttcaatgcaattgatcataaacctgtc
atacgtggtacgcatagtagtccattaaacaaaaattctagtcaggatgtgaaacctgga
ccaactcaaatagtgaatttaaaacatgaacctgtaggatctccccagacaggtgtctat
aatgtgaaacaggagacaggatctcccagctcaggattcggtgttaaacaggagcaccaa
ctagcaatacagcctgtgcctggtgcaccacaaaatgtgcctcatccaagtgttcatgtt
gtgcagggaaaaggaccattgacaggaaatccaagtgtgataacagtgagaactcctggg
caaacccatccatctcaagttattatgcaaccccaaataattacaactcagtcttcgagt
gcacagatgcatgtggtatctgtgagtggttgtactgtatccactcgtcctacaggaaca
gttcaagtgactcacggcaaaaatatcaatccaaggatggccacagctgcccatttcaga
cctcagcaaattagcattgcacccagaccaggaacaacgccgaacacgattgctttgcct
cctggtgttcagatacctccaggagcccaactggtcagaaacgagcagggacaattggtg
tttgttatccagcagcctgcagtaactagtgcagcaaccggccatcgaatgtttgttcgg
cccacaagttctccaggtccagttcgccctcaccagatagtgacaatacagcccccaaac
tcgatcacacaacagggaattccccgtcaagtcaccctcagcacggtcaacacagccagc
ccggtacccaacttggtgaggaccactacccaaggaactgctctccacaccacatcctca
ggagcaccgcagcagccacctgacaatgtcaaaaaatgcaagaattttctgtctactctg
ataaaacttgctcagagtcaacctcaacagacagtgaagaatgtccgggagctaatacag
ggcttgatagatggaaaagtggaacctcaaacattcacagagaagttgcagatagagctt
cgttcatcgcctcaaccatatttagtgccattcctcaagaaaagtctgccagctctgcgt
caagcgttgatagccaacaccatgacaatagatggcgtaaaagcacctcccctagaagtt
cttcaaccaatggtatccatggcaactctagtccatcatcaaggtcctctccatccgtcc
actcaacctgcagctttacgagggcaacatgtcattggaattcctaaaactgtgaccgcc
atctcagggaagagtccgcatcttcctggcgttgcaggaatgcctggatcctctcattca
cggagctccacaccccacaaagaaaaaaccaaatacgactcgctcaaggatgatgatgac
atcaatgatgtagcaaccatgggtggagtcaacctctcagaagaaagtaaaaacattttg
gccagcaatgctgatttcattgggacacaaattcgttcctgtaaagacgaggcctttctg
tatcattgtcctttacttggccgaataacagctatagccaagaaacatggtttagacgac
gtttcgtcagatgtagccaacttggtctctcatgcaacacaggaacgccttcgagatctc
ctagaaaaactagacactattgcagagcatagaatagaaatctttaagatgaatgagagg
tttgaaccctccactgatgccaagtcacagctaaagtttctcgaagagctggataaactg
gagaaaaaacgacatgatgatcaagagtgggagaaaatcatgaaggcagcaaagagtcgg
tcaaaaaacgaggatccggagcaacagaaaataaagcagaaagccaaagagctacagcag
gcagaaattgagaggatgagacaagaagaggcaaatcagacagccttggcagcaatagga
cctcgcaaaaagcgcaaaactgactttggagagataagtaccagtggaagtggagggctt
aacgtcagcaatggaggaaacttgtctgccaaaactgccagtgcgcggcaaagaatcaag
cgagtaactttgcgagatgttttgttcttgatggagcaagaacgttccttgagcaaatca
actcttctctacaaaacattcctaaagtga
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