Crassostrea virginica (eastern oyster): 111136164
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Entry
111136164 CDS
T09197
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111136164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111136164
03009 Ribosome biogenesis [BR:
cvn03009
]
111136164
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111136164
Spliceosome [BR:
cvn03041
]
Complex A
U2 snRNP components
U2 related factors
111136164
Complex B
111136164
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111136164
Ribosome biogenesis [BR:
cvn03009
]
Eukaryotic type
90S particles
Helicases
111136164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
T2SSE
AAA_30
TsaE
PhoH
AAA_25
Motif
Other DBs
NCBI-GeneID:
111136164
NCBI-ProteinID:
XP_022342523
EnsemblRapid:
LOC111136164
UniProt:
A0A8B8ERY6
LinkDB
All DBs
Position
5:complement(87729349..87738384)
Genome browser
AA seq
726 aa
AA seq
DB search
MSKRRIDVGDYSQSKRGRDDEKEKKDEKAYKSVFEQFGISKPTLQMNPFTGLPYTPRYFE
LLTKRKMLPVWEYKEKFCEILNNHQILVLVGETGSGKTTQIPQWCLEWVRCRYQKKGVAC
TQPRRVAAMSVSQRVSEEMDVGLGQEVGYSIRFEDCTSSKTLLKYMTDGMLLREAMSDPL
LEAYGVVMLDEAHERTLATDILMGLLKEVAKQRGDLKIIVMSATLDAGKFQNYFDNAPLM
TVPGRTHPVEIFYTPEAERDYLEAAIRTVIQIHMCEEGPGDILLFLTGQEEIDEACKRLQ
REIDNLGPDVGDMKCIPLYSTLPPNLQQRIFEAPPATKANGAVGRKVVVSTNIAETSLTI
DGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTKPGKCFRLYTEKAY
KQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALD
DDGELTELGSMMAEFPLDPQLAKMVIASCDHSCSNEILSITAMLSVPQCFVRPTEMKKTA
DESKMRFAHIDGDHLTLLNVYHAFKQCQEDPQWCYDNFVNYRSLKSADNVRQQLARIMDR
FNLRRSSTDFASRDYYLNIRKALVSGFFMQIAHLERTGHYLTVKDSQVVQLHPSTCLDHK
PEWVLYNEFVLTTKNYIRTVTDIKPEWLIKVAPQYYDMSNFPMCEAKRQLERIIAKLESK
QYQEGF
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagacgaatagatgtcggtgattattcacaaagtaaacgagggcgggacgat
gagaaggaaaagaaagatgaaaaggcttacaagtcagtgttcgaacaatttgggatttcc
aaacccaccctccaaatgaatcccttcacaggtttgccgtacacccctcggtactttgag
ttactgaccaagagaaagatgctgcccgtctgggaatacaaagagaagttctgtgaaatc
ttaaacaatcatcagattcttgtactggttggcgaaacaggcagtggtaaaacaacacag
attccacagtggtgtttagagtgggtgcggtgtcggtatcaaaagaagggtgtggcctgt
acccagcccaggagagtggcagccatgtccgtctcccagcgtgtgtccgaggaaatggac
gtgggtctcggacaggaagtcggatacagcatccgtttcgaggactgcacatcctccaaa
actctcctcaaatacatgacagacggtatgttactgagggaggctatgtctgaccccctg
ctggaggcctatggggtggtgatgctggacgaggcccacgagaggaccctggcaacggac
attctcatggggctcctgaaggaagtggccaaacagcgaggcgatctgaagatcatcgtc
atgagcgctacgctggacgccggcaaatttcaaaactactttgataacgccccgctaatg
acggtgccgggaagaacccatcctgtagagatcttctacactccggaagctgagagggac
tatctggaggcagccatccggaccgtgatccagatccacatgtgtgaagaggggccgggg
gacatcctactcttcctcacaggtcaagaggaaattgacgaagcttgtaaaagactacag
agggaaatcgacaacctgggaccagatgtgggagacatgaaatgtataccgctgtattcc
accctaccccccaatctacaacagcggatcttcgaggccccacccgccaccaaggctaac
ggtgctgtggggaggaaagttgtggtgtccacaaacattgccgagacctcgctcaccata
gacggagtggtgtttgtcattgacccagggtttgccaaacaaaaagtgtacaatccgagg
attcgtgtggaatctctgctagtgacggccatcagtaaagccagcgcccagcagagagcc
gggcgtgccgggcgaacaaaaccagggaagtgcttccgtctgtacacggagaaggcgtac
aaacaggaaatgcaggacaacacatacccagaaatcctccgctccaacctgggctccgta
gtgctacagctgaagaaactgggaattgatgatctggtgcattttgacttcatggaccca
cctgcccccgagaccctgatgcgagcactggaattgttgaactatctggccgccctggac
gacgacggagagctgacggagctgggatccatgatggccgagtttccgctggacccccag
ctggccaagatggtgatcgccagctgtgaccacagctgttccaacgagatcctctccatc
acagccatgttgtcagtcccacagtgttttgttcgacccacggaaatgaagaaaaccgct
gacgagtccaagatgagatttgcccacattgacggcgatcatctcaccctgctgaacgtg
taccacgcctttaaacaatgtcaggaagatccacagtggtgttacgataactttgtgaat
taccggtcactgaagagtgccgacaacgtgcgacaacagctggctcggatcatggaccgg
ttcaacctacggcggtccagtacagactttgctagtcgagactactacctgaacatcaga
aaggctctggtctctggattcttcatgcagattgcccacctggagcggacgggtcactac
ctgacggtgaaggacagccaggtggtccagctccacccctccacctgtctggaccacaaa
cctgagtgggtgctgtacaacgagttcgtgctgaccaccaagaactacatccgtaccgtc
accgacatcaagccagagtggttaataaaagtggctcctcaatactacgacatgtctaat
ttcccaatgtgtgaagccaagcggcaactagagcgaatcatcgccaagctggaaagtaaa
cagtaccaagaaggattttaa
DBGET
integrated database retrieval system
