Crassostrea virginica (eastern oyster): 111137104
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Entry
111137104 CDS
T09197
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111137104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvn03021
]
111137104
03036 Chromosome and associated proteins [BR:
cvn03036
]
111137104
Transcription machinery [BR:
cvn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111137104
Chromosome and associated proteins [BR:
cvn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111137104
PBAF complex
111137104
GBAF(ncBAF) complex
111137104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
111137104
NCBI-ProteinID:
XP_022344074
UniProt:
A0A8B8EVR3
LinkDB
All DBs
Position
1:complement(984471..995318)
Genome browser
AA seq
1072 aa
AA seq
DB search
MALHKKKDGSPNVKFFETVETIAQFDSVRTWLNKNYKKYMQADPPTNKNLASLVCQLLQF
MEDAFGKQVSNPALTKLPMRCFLDFKPGGALCHILAAVYKFKSDQGWRRFDFQSPSRMDR
NVEMFLQIEKTLVQNKCLIMPIIYIMTDMDKVLLPKLKDIIKRHQGTLTEDDEEATHIVH
VLPTHPPLEEEFIRPVMKRDRNAMIHWWYTPDSYDTWMPDVSPDLEIDTPQHSGAWEVTA
RWLMDLEEFNEWMNEEDYLIEDEYETRKNKRPKNKFTVEEFIANQESDKREKRDKKSKRK
RSPSPTPAPSSEKKKRKSTRTPGGPGNSKKRLNKEDTDDDLTRDMEDPLPETNIQEVQLS
KQSSSNRSNKDSENQPIKGGTIMDMDEEATDKLIGEDRGEEEGVEDDSKREKEDEDNVTE
QTHHIIIPSYSAWFDYNAIHAIERRALPEFFNGKNKSKTPEIYLAYRNFMLDTYRLNPTE
YLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDVDNRATAMGPPPTSHFHIMADTPS
GLQPVNPPKINQPTAAKQIVSFDDKDKERDTSEGRELSDFSLRMDIYSKKALKDKGAATR
SREWTDQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPFLEESDFSHA
GPLAYQPIPFSQTGNPIMSTVAFLASVVDPRVASAAAKSALEEFSKMRDEVPPALTDAHT
KMVEDATKEGKSVDAEFGLEKSGIAGTAPEKEEEETVKEEDEKKEEEKTEEKKDEEKEEK
KEEAMETDSQENDEKKEEEKKEEKGNEEDKAETTTEPSEKEETEEKKPEEEAETEEQIKE
KASQAVAKLPIKPDGNVATAAAAALASAAVKAKHLAAVEERKIKSLVALLVETQMKKLEI
KLRHFEELEAIMDRERDALEYQRQQLLQERQQFHMEQIKAAEHRARQMAMQQMVTEQRQQ
NMAGGDQGAGAGAPVMATNPTLAAAVGQSYPLSGSPMPPQGPQATQGSPAPAPPPAPVSQ
APVAQPVPSNTAEGDQSGAPPSSDSQPEPMSTDPPQTAGHTTQSMMGTSPVS
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgcacaaaaagaaagacggctcgccaaatgttaaattctttgaaactgtcgaa
actattgcacaatttgattccgtgagaacatggctgaacaaaaactacaagaagtatatg
caagcagatccaccaacaaacaagaacctggccagtttggtgtgccagctactccagttc
atggaggatgcatttgggaaacaagtcagcaacccagctcttacaaaacttcccatgaga
tgttttctggattttaagcctggtggcgccctctgtcacatactggctgccgtctacaaa
ttcaaaagtgaccagggatggaggaggtttgactttcagtcaccatctaggatggataga
aatgtagaaatgttcctacagattgaaaaaaccttggttcaaaataaatgcctgattatg
cccatcatctacatcatgaccgacatggacaaggttcttcttcccaaactgaaggacatc
atcaagcgacatcaaggcacgctgacagaggacgacgaggaagccacgcacattgtccat
gttcttcccacccacccacccctagaagaggaatttattcgtcctgtgatgaaaagggac
cggaatgcgatgatccattggtggtacaccccagacagttatgacacatggatgccagat
gtgtcacccgacctggagattgacacgcctcaacacagtggcgcctgggaggtgacggcg
cgatggctgatggacctggaggagttcaacgagtggatgaacgaggaggactacctgatt
gaggatgagtatgaaacaagaaaaaacaaacgtccaaagaacaaatttacagttgaggag
tttattgccaaccaggagagtgacaaaagagagaaacgagacaagaaaagcaagaggaag
aggtctccctcccccacgcctgccccgtcctctgagaaaaagaagagaaagagcacaaga
acacctggaggaccggggaattccaagaagaggctgaataaggaagacacagatgatgat
ttgacccgggacatggaagaccctctcccagagaccaatatacaggaggttcaactctcc
aaacaatcgagcagtaaccgtagtaacaaggacagtgagaaccagccaatcaaaggtggg
accatcatggacatggatgaggaggctactgacaagttgataggggaggatcgaggtgaa
gaggaaggggtggaggatgattccaagcgggagaaggaagacgaggacaacgtgacagaa
cagacccaccacatcatcatccctagctactcagcctggtttgactacaatgccatccac
gctatcgagagacgggctctccccgagttcttcaatggaaagaacaagtccaaaactcca
gaaatatacctggcctacaggaattttatgctggacacgtacagacttaaccctacagaa
tacttgaccagcacggcttgcaggagaaacctggcaggggacgtgtgtgccattatgagg
gtgcatgccttcctggagcagtggggcctggttaattaccaggtggatgttgacaacaga
gccacagcaatgggacccccacccacctcccacttccacatcatggctgacactccctcg
ggtctacagcctgtcaatccacccaaaattaaccagcccactgcggccaaacagatagtg
agctttgatgacaaagacaaggagagggacacaagcgagggacgggagctgtccgatttc
agtctacgcatggatatctactccaagaaagctctaaaggacaagggagcagctactcgt
tcccgggaatggaccgatcaggaaaccttgctactcttggagggactggaaatgtacaaa
gatgactggaacaaagtcagtgaacatgtgggcagtcggacgcaggacgagtgtatccta
cacttcctccgcttgcccatcgaggacccgttcctggaggagagtgattttagtcatgca
ggacctctggcataccaacccatccctttctctcagacggggaaccccatcatgtctact
gttgcatttctggcgtcggttgttgatccaagagtggctagtgcagcagctaaatcagcg
ctagaggagttttctaagatgagggacgaggttccccctgctctcactgacgctcacact
aagatggtggaggatgccactaaagaaggaaagtctgtagatgccgagttcggtctggag
aagagcggcattgcaggaactgccccagaaaaagaggaagaggagacagtaaaggaagag
gatgaaaagaaagaagaagaaaagactgaggaaaagaaggatgaagagaaagaagaaaag
aaagaggaagctatggaaacagattctcaagaaaatgacgagaagaaagaagaggagaag
aaggaagagaaaggcaatgaggaagacaaggcagagaccacaactgagccgtcagaaaaa
gaggagactgaggagaagaaaccggaggaggaggcagaaactgaggagcaaatcaaagag
aaagcctcccaggcggtggccaaactcccgattaaacccgacggcaatgtggcgactgct
gccgcagcggctctggcatcagcggcagtcaaagccaagcacctggccgctgtggaagag
aggaagatcaagagtctagtagcactgcttgtagagactcagatgaagaaactggagatc
aaattacgccattttgaggagctagaggccataatggaccgagaaagagacgctttggag
taccaaagacagcaactgctgcaagagcgacagcagttccacatggagcagatcaaggct
gctgagcaccgcgcccgacagatggccatgcagcagatggtgacagagcagcgccagcaa
aacatggcgggtggagaccaaggggctggagccggagcacctgtcatggccacaaacccc
accctggcagcagctgtgggccaaagttatccgctgtccggatctcccatgccccctcag
ggccctcaggccacccagggatctcctgcccccgccccacccccagctcccgtgtcacag
gccccggtagctcagccggttccctccaacacagcagagggggaccagtcaggagcccca
ccctccagtgacagtcagccggagcccatgagtacggaccccccacagacagcaggacat
actacacaaagcatgatgggaaccagtcccgtctcctaa
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