Crassostrea virginica (eastern oyster): 111137332
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Entry
111137332 CDS
T09197
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5-like isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111137332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111137332
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
111137332
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
111137332
NCBI-ProteinID:
XP_022344473
UniProt:
A0A8B8EY26
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All DBs
Position
5:complement(14132625..14151327)
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AA seq
226 aa
AA seq
DB search
MTTHGRTSGWPKGTNPVSYAAKYGITNPSPTLDRPINLYPLTNYTFGTKEPLYEKDSSVP
ARFQRMRDEFEKIGMRRSVEGVLIVHEHGLPHVLLLQLGTTFFKLPGGELNSGEDQVEGL
KRLLTETLGRQDGGTMEWVVEDTIGNWWRPNFEPPQYPYIPAHITKPKEHKRLFLVQLPE
KALFAVPRNYKLVAAPLFELYDNSAGYGPIISSLPQALSRFNFIYN
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaccacacacggtagaactagtggttggccaaaaggaacgaatccagtttcgtatgct
gcaaaatatggcattacaaatccgtctccaacattagatcgccccattaatctgtaccct
ctaacaaactacacatttggaaccaaggagcccctgtatgagaaagacagctcagtccct
gctcgttttcagcgcatgagggatgaatttgagaagattgggatgaggcgatctgtggag
ggagtgttaattgtacatgaacatggactaccacatgttctccttctgcaattgggaact
acatttttcaaattaccgggaggagaattaaattctggagaagatcaagtagaaggcttg
aagagattacttacagagacccttggcagacaggatggtggcactatggaatgggtggta
gaggatacaataggaaactggtggagacctaactttgaacccccacagtatccatacatc
ccagcacacatcacaaaacccaaggaacacaaaagattattccttgtccaactgccagaa
aaagctttgtttgctgttccaagaaattataagttggtggctgccccattgtttgaatta
tatgacaacagtgcaggatatgggccaattatctccagtttaccacaagctctcagtcgg
ttcaacttcatatacaactga
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