Crassostrea virginica (eastern oyster): 111137385
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Entry
111137385 CDS
T09197
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111137385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111137385
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111137385
Spliceosome [BR:
cvn03041
]
Complex C
Other components
Step II factors
111137385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_DEAH11
Helicase_C
DEAD
IBR
IBR_1
IBR_2
AAA_19
AAA_22
OB_NTP_bind
RBD_DEAH11
KH_DEAH11_2nd
Helicase_RecD
zf-RING_UBOX
zf-RING_2
RRM_1
AAA_30
RRM_DEAH11
HA2_C
ABC_tran
nSTAND3
HA2_N
Flavi_DEAD
RsgA_GTPase
KH_DEAH11_1st
AAA_29
Motif
Other DBs
NCBI-GeneID:
111137385
NCBI-ProteinID:
XP_022344536
UniProt:
A0A8B8EX29
LinkDB
All DBs
Position
5:complement(23127566..23134711)
Genome browser
AA seq
1709 aa
AA seq
DB search
MADRDYPRRARVNRGKGNRRKEGWKRKDLEGKSPRDSKQLSPENQETREKSERLLTKPGP
TFNLIVFQPFKEEKEFLEYLRQKDLPPDIEYEIESFTLTGSKTSIFIHFPSNKAHKDFQS
WIRQTRKIGFAVRFQREEKAKATKEFIEKNLQIIEERSTSILKNHQVKMLNTTEELTSIC
GTQQGKKKSQYIPLQEYERRQLLKKTLEDKSSELNAQKVEFENYEKDIKEQLKRQEGCSV
LQNDIDQLLLNYDIECTRLEQALPIYAKRSEIVETVLRNQVCIILGETGSGKSTQLTQYL
LQSELSKKGRIVCTQPRKVAAASLAQRVASEMKSTVADVVGYQCGIQKKVSEMTRAVYMT
DHTLLNECLKDKFLYDYSCIIIDEAHERSIYTDILLGMIKKCLPRRPELRIIVTSATIDP
ELFVRYFKDCPVIRVSGRMYPVDIEWNDVSNEEDLEDFERKAVDKTLEIHDRESDGDILL
FLTGQLEIERSIERLQWNLKDRSDHLILPLHGKLQTEEQNKIFKETPHGKRKIVISTNVA
ETSVTIPGIKYVLDTGLAKEMRYDPDKKVNSLKLVKITKSSADQRKGRAGRTSPGKCFRF
YSKDDYDKMVTSSVPEILRTHIGHAILKLLQLNVNPMEFDFVESPPENAMETAFKELVML
GAVKDDKITKIGKWIAQLPLDPNLGVFVYNAISKRVGLEAIIIAASCTVSGNLFYRAGSN
EQKDTCDKLKIPFCHTKGDHFTFLNVFKKWHIVPEKEKVQWCINNSINGRAMRNIRDIVN
EVIFILKKEMNIPLKFELKDGTDNEKELQKLLFKAFQSNLSYFLGHEKAGYHFIDKDQQM
VIHPSASFQSLAYYPKWVIIEKVLNTSREYAVNITEVQESDVKDALERKELIFDIEEIQR
KRLEPIYKEFVGQQLQRQFVGPRWKHAKEIEKKLHSENKESVFVIDADRDKGEISIYAPE
DKDEISHEALKLALDPIREKLQTEKVNIPIFPRCYNVKVSIGPGGEIQDLLCEDDYNSVY
IYCSDDEFENNEELIDWLGQFGKIHNFFKRSPANTNQKYRGEVVFETSESAKRAVSKTRD
KNSKIQAKPPVLKTDDSDAFKAKLTWCRRKPQSFGFVQIKNADTLNTVLTLSTMTKVSVG
GSCVKISRSREKMDELYVQGLNALVSEDILREGVVEAFNISEDDVGKTFIPRQRVGVTTR
EILETCKTRLERHIGQYVDKKRFRVVLREPYPNDYYFNGYITFNDTDEGYEACSKLHNKI
YLNDSVVSFTPEVHSRMYVLDRVFKRIEKKIRAFKENVKKEDRVTIDIKQNQTGNYIIGI
DAESVDKMLKTRNTLLEILQGETLDMEAIPSLRHMFTRNGRSKIEEIMVKTHTLIVLNDR
NTTISIHGEETDRALAIEEIKSFIENLGSSKLRIIDLKGEYQPSGLMKRIIQMHGIDLQG
LKDAANLVSAELDHRKHRIKLLGSEEAIELAIRDVEVITQALLQDTHCKISTSPDCGICL
CEVSETELYRLESCGHSYCKDCVNLHLKSAIEMKEFPLRCCYEGCSMLWAWSDINNMKKF
GFCSLQNVISASLSCYVAQYPDKARYCITPDCQMVYKVSKEGGDRFVCSLCLTVLCKRCH
VNYHTGLSCAMYQKRKQIDENDGLQEWLLRDQLNRDLCPKCYIGIEKHGGCQHMICTKCK
SHICWICKAFFDTSPECYNHMHENHGTYM
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atggccgatagagattacccaagacgtgcaagagtcaacagaggaaagggaaatcggagg
aaggaaggatggaaaagaaaagatcttgaaggtaaaagtccgagagactcgaaacaatta
tccccagaaaaccaagaaacgcgagaaaagagcgaaagattgttgacaaaaccaggcccg
acgttcaatttaatcgtctttcaaccatttaaggaggaaaaggaattcttggaatattta
cgacagaaggatttaccaccagatattgaatatgagattgagtcatttacactcactgga
tcgaaaacatctattttcattcactttccgagcaacaaagcgcacaaagatttccagtct
tggattcgtcaaacacgaaaaatcggcttcgccgttagatttcaaagagaggaaaaagca
aaggcaactaaggaatttatcgagaaaaatcttcagataatcgaggaaagaagtactagt
attttaaaaaatcaccaggttaagatgttgaatactaccgaagaacttaccagtatctgt
ggaacacagcaagggaaaaagaaatctcagtatattcctcttcaagaatatgaacggaga
cagttgctcaaaaagacattagaagacaaatcatctgagcttaacgcccaaaaagttgag
tttgaaaattatgaaaaagacatcaaagaacagctgaaacggcaagagggatgctccgta
ctacaaaatgatatagaccaacttttattgaattatgatatagaatgcacaagactagaa
caagccttaccaatttatgcaaaacgctcagaaatagttgaaactgttttacggaatcag
gtttgcatcattcttggcgagacagggtctggaaaaagtacacaactaacccaatacctt
ctccagtcagaactgtccaaaaaaggtcgaattgtttgtacacaaccaagaaaagtagca
gctgctagtttagctcaacgtgttgcaagtgaaatgaagtctactgttgctgatgttgtt
ggctatcagtgtggaattcaaaagaaagtgtccgaaatgacaagggctgtgtatatgaca
gaccatacacttcttaacgaatgcctaaaagacaaatttctttacgattactcctgtata
ataattgatgaggcacacgaacgtagcatatatactgacattctacttggaatgattaaa
aaatgcttgcctcgtagacccgagttgcggatcattgtaacttctgctacaattgacccg
gaattatttgttcgatatttcaaagactgtccggtgattagggtatctggtagaatgtac
cctgttgatatcgaatggaatgacgtgagcaatgaagaagatttggaagactttgaaagg
aaagcagttgataaaacattagaaatccatgatagagaatcagatggagacatccttctt
tttcttactggacaactcgaaatagagcgaagcattgagagactgcaatggaatcttaaa
gacaggtcagatcatttgattctgccattacacgggaaactccaaaccgaagaacagaac
aaaatcttcaaagaaaccccacatggaaaaagaaaaattgttatttcaaccaatgtagca
gaaacgtctgttacgattccaggaataaaatatgttttagatacaggacttgccaaagaa
atgcggtatgaccctgataagaaagtcaattctttaaagttggtcaaaattacgaagagt
tctgctgatcaaagaaaagggagggctggaagaacatctccagggaaatgttttcgtttt
tatagcaaagacgattatgacaaaatggtaacatcttccgtcccagaaatccttaggacg
catataggacatgccattcttaaattgttacaactcaatgttaatcccatggagtttgat
tttgtagagtcacctccagaaaatgctatggaaacagctttcaaagagttagttatgctt
ggagctgtgaaggatgataaaataacaaagattggtaaatggatagcccaacttcctttg
gatccaaaccttggagtcttcgtatacaatgctatttctaagagggttggattagaagct
atcatcatagcagcgtcttgtactgttagtggaaatctgttttatagggcagggtctaat
gagcaaaaggatacttgcgataagcttaaaatacctttctgtcacaccaaaggagaccat
ttcaccttcttgaatgtcttcaaaaaatggcatatagttccagaaaaagaaaaagttcag
tggtgcattaacaattctatcaatggaagagcaatgcgaaacattcgtgacatagtcaat
gaagttatttttatcttaaaaaaagaaatgaatattcctttaaagtttgagttaaaagat
gggactgataacgagaaagaattacagaaacttctgtttaaagcttttcaaagcaatctc
agttattttcttggacatgagaaagctggttaccattttattgacaaagaccaacaaatg
gtcatccatccatccgcctcattccagtctttagcttattatccaaagtgggtaattatt
gaaaaagtgttaaacacgtcccgggaatatgccgtgaatattacagaagttcaggaaagt
gatgtgaaagatgcgttagaaagaaaagaactaatatttgatattgaggaaatacaaagg
aaacgtttggaaccaatttacaaagaatttgtcggacaacagctccaaagacagtttgtt
ggtccaagatggaaacatgcaaaagaaatagaaaagaaactgcattctgagaataaagaa
tcagtctttgttattgacgctgacagagacaaaggcgaaatatcaatttatgcgccagaa
gacaaagatgaaatatcacacgaggcactgaaattagcacttgatccaataagagaaaaa
ttacaaaccgaaaaggtaaatatccccatatttcccagatgttataacgtgaaggtgtct
ataggaccaggtggagaaatacaagacttattgtgtgaagacgattataattctgtgtat
atatattgctcagatgatgaatttgagaacaatgaagagctaatagattggctgggacaa
tttggtaaaattcataacttttttaaaagatcccctgctaatactaatcagaagtaccgc
ggcgaagtcgttttcgagacaagtgaatctgcgaaaagggcagtttcaaagacacgtgat
aaaaattcgaaaattcaagctaaacctcctgtattgaaaaccgatgactcggatgcattc
aaagccaaactgacctggtgccgtcggaagccacagagttttggttttgtgcagataaag
aatgctgatacattaaacacagtgttgacactttccacaatgacgaaagtgtctgtagga
ggatcttgcgtaaagattagtagaagtagggaaaagatggatgagttgtacgttcagggt
ttgaatgctctcgtcagtgaggatattttgagggaaggggttgtcgaagctttcaatatt
tctgaagatgacgttggtaaaacctttataccgcgtcagagagttggagttacaacgagg
gaaattctggaaacttgcaaaactcgattagagcgacatattggtcagtatgtagacaag
aaaagattccgtgttgttctacgagaaccttatccgaatgactattactttaatggatac
atcacttttaatgacacagatgaaggatatgaagcttgttcaaaacttcacaataaaatc
tacctaaatgacagcgttgtgtcatttactccggaagtccattctcgtatgtacgttcta
gatcgcgtatttaaacggattgagaagaaaatcagagccttcaaggaaaatgtgaaaaag
gaagatagagtgacaattgacataaaacagaatcaaacaggtaactacataataggcatc
gatgccgaaagtgtagacaagatgttaaaaactagaaatactttactggaaatccttcaa
ggagaaactttggatatggaagcaataccatctttgcgacatatgttcactcggaacggt
agaagcaaaattgaggaaatcatggtaaagacccacactctgatagttctgaatgacaga
aatacaaccatatccattcatggagaagaaacagatcgtgctctggctatcgaggaaatt
aaaagtttcatcgagaacctcggttcgtctaaactgcgcataattgacctgaaaggcgaa
tatcaaccgtcaggtctaatgaaacgaattattcaaatgcatggtatagatttacaggga
ctgaaagatgcagctaatttagttagtgcagaactagaccacagaaagcataggatcaaa
ttacttggttccgaggaagcaatagagctagctatacgggatgttgaagttataactcaa
gcgttgcttcaagacactcactgtaaaatttccaccagcccagattgcgggatttgtttg
tgcgaagtgtccgaaactgaattgtaccggctggagtcctgtggccattcatattgtaaa
gattgtgtgaacttgcatttgaagtcggcaatagaaatgaaagagttccctctccgatgc
tgttacgaaggctgtagtatgctctgggcatggagtgatataaacaatatgaaaaaattt
ggattttgttctttacaaaacgtgatcagtgcatctttgtcttgttatgtggcacaatac
ccagacaaagcacgatattgcattacaccggattgtcagatggtttacaaagtttccaag
gaaggaggggacagattcgtctgttctctctgtttaaccgtcttatgcaagaggtgtcac
gtgaattatcatacaggactatcgtgtgcgatgtatcaaaagcgaaaacaaattgatgaa
aatgatgggcttcaggaatggcttttacgagatcaacttaatcgagatctgtgtccaaaa
tgttacattggtatcgaaaaacatgggggatgccagcatatgatatgcacaaaatgcaaa
agtcacatctgctggatatgtaaggcattctttgacaccagtccggagtgttacaaccat
atgcacgaaaatcatggaacttatatgtag
DBGET
integrated database retrieval system
