Crassostrea virginica (eastern oyster): 111138201
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Entry
111138201 CDS
T09197
Name
(RefSeq) nucleoporin GLE1-like
KO
K18723
nucleoporin GLE1
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111138201
03015 mRNA surveillance pathway
111138201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111138201
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111138201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GLE1
MYG1_exonuc
MHC_I_3
Motif
Other DBs
NCBI-GeneID:
111138201
NCBI-ProteinID:
XP_022345767
UniProt:
A0A8B8F0R0
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Position
5:2264428..2271674
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AA seq
771 aa
AA seq
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MTMSSIVTLLKASPKGRLVYRSDPNIDQEYFEEYLSPPKLSRPHQEVAAENSFCCHDDEE
TGQVYDTSDSDISDCIRNLHVEVKNNTRKTQKMKVHFDNENSNCATDFKIKICNKQAGPR
LMHGDLGTGLSNGMQIRIKNDFYDAEDKRKAKGSLREKPLDLPEFEKPQFQRIVVSPEYN
KSRLDIQDYEKELNHKAQKEVERKREQFKRAQRIINEKAEQRIDEYENRQLEKAKHQRHL
VEQHEQEGSAKLLEIQTKMKKNHLLHAKMVEEKKERIQEEVKRLEAERMKILEKTKTIVS
DSKTLLDRIKTMYSSFSSKLPENITKAIQGAQQRYNISQQIVSGEATVPGITNQQFVIIA
ENFRFLSNIHDFVKQSIQEIKEREKKEADAAAEEEARKKAEAEARRAQPPSVPVESPGQP
LVSSTPIPGATGTQGAPAGASPAAPEVRPQEGEVLCVDMGAFQEYTRLQQKLTETETAIQ
VLSSTQQLKKLKFDLQKAVNIPVNAISAVSGAHLRDKLQRLLVLLSGQQVEITNRRVSVS
EHPAALTFCKYLIAKMIVKKGEEQVSSIFESAFPLAAVTVGLLVDHSDIKDLLLGQFHSL
CPYTVPYHKPRQDQQSREDYHKALGYKYDSDGNVEKQDKFLKRMSGIMRLYASLMVSSPP
QRQSVHPFGLENAWLWLSRVMNIQPLPDVTATMVFDLLEVTGHALYREYRKQFLKMLHIL
IREFLPKLKSVASSGVGGPVSRLEALIKASIQRQGQIPPPEGLLPQNFWFS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgtcgagtattgttaccctgttaaaggcttcgccaaagggacgattggtgtat
agatctgaccctaatatcgatcaggaatattttgaagaatatttgtccccaccaaagtta
agcaggcctcaccaagaagttgcggcagaaaacagtttttgttgccatgatgacgaagag
actggacaggtgtatgatacgtcagacagtgatatctctgactgtattagaaatcttcat
gttgaagttaaaaacaacaccagaaaaacacaaaaaatgaaggttcattttgataatgaa
aactccaactgtgccacagacttcaagatcaagatttgcaacaagcaggctggaccgcga
ctaatgcatggtgatttgggcactggtttgagcaatggaatgcaaatcagaattaaaaat
gatttttatgatgcagaggacaaacggaaggcaaagggctcgctgagagagaaacctctt
gatctgcctgagtttgagaaaccccaattccagaggatagtagtctcccctgaatacaac
aagagtagactagatatccaggactatgaaaaggagctcaatcataaagcacagaaagag
gtggagaggaagagggaacaatttaagagagctcagagaataatcaatgaaaaggcagaa
cagagaattgatgagtatgaaaatagacaactggaaaaagccaaacatcagagacacctg
gtggaacaacatgagcaagaggggtcagccaagttgttggaaattcaaacaaaaatgaaa
aaaaatcatctgttacatgccaagatggtggaagagaagaaggagaggattcaggaggaa
gtgaagagattggaagctgaaaggatgaagatcttggagaaaacgaagaccattgtgagt
gactccaaaacacttttggacagaatcaaaactatgtatagttccttctcatccaaactt
cccgaaaatattaccaaagccatccagggagcacagcagcgctacaacatatcacagcag
attgtgtctggcgaggccacggttccagggataacaaaccaacaattcgtcatcatagcc
gagaatttccgattcctctctaacattcatgactttgtcaaacagtccattcaagaaata
aaagagagagagaagaaggaagctgatgcggcagctgaagaagaggctcggaagaaagca
gaggctgaggcccgcagggcacaacctcccagtgtccccgttgaatcccctggacagcct
ttggtttcatccaccccaatacctggggcaacaggaacccagggggcaccagcaggggct
tcaccagctgccccagaagtcaggcctcaagagggagaggttctatgtgtggatatggga
gctttccaggagtacactcgactccagcagaagttaacagagaccgagacggccatacag
gtcctctcctccacccaacagttaaagaagttgaagtttgatctccagaaggctgtgaac
atccctgttaatgctatctctgctgtcagcggggctcaccttagggacaagttacagcgc
ctcctggtgttactctcaggacaacaagtggagataaccaacagaagagtctctgtttca
gaacacccagctgctctaaccttctgtaaatacctcatagccaagatgatagtgaaaaaa
ggggaggagcaagtctcgtcaatctttgagtcggccttcccgttggctgccgtgacggtc
ggcctgctggtggaccactcggacatcaaagatttgcttctgggtcaattccactccctg
tgtccgtacaccgttccctaccacaaaccccggcaggaccagcaatccagggaggactat
cacaaagcactaggatacaaatatgacagtgacggcaacgtggaaaaacaggataagttc
ctgaagaggatgtccggaatcatgcgactgtacgcttcgctgatggtttcctcccctcct
cagagacagagtgttcaccccttcggactcgaaaatgcatggttatggttgtcaagggtg
atgaacattcaacctcttccggacgtaacagctaccatggtgtttgacctgctagaggtc
acaggacatgctttatacagggaatacagaaaacagtttttgaaaatgctgcacatattg
atccgtgaatttcttcccaaactgaagtcagtggcctcctcgggggttggggggcctgtg
tctcgcctggaggccctgataaaggccagcattcagcggcagggacagattccaccccca
gagggcctactgccccaaaacttctggttttcttga
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