Crassostrea virginica (eastern oyster): 111138213
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Entry
111138213 CDS
T09197
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03015
mRNA surveillance pathway
cvn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111138213
09123 Folding, sorting and degradation
03018 RNA degradation
111138213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111138213
03041 Spliceosome [BR:
cvn03041
]
111138213
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111138213
mRNA cycle factors
Stress granule specific factors
111138213
Spliceosome [BR:
cvn03041
]
Complex C
Other components
Complex C specific factors
111138213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Hikeshi-like_N
MLLE
RRM_occluded
RBD_DEAH11
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
111138213
NCBI-ProteinID:
XP_022345788
UniProt:
A0A8B8F1V1
LinkDB
All DBs
Position
1:complement(27638110..27654104)
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AA seq
679 aa
AA seq
DB search
MFGLIVAGRLVQTDVTQVSENQFLFNIPDADDINHLVIFMTGQSPFPDGLGAAVYFSFPN
PQGQAWALLGHITNTKPSAIFKITNIKKSSMMDGNPFASIMPHVSHMGQVGISVEPLSQL
SQQTPEAGTSVSKIVCDEHGSRGYGFVDFETEEAARIAIEKVNGMLLNGKQVFVERFMSR
QERLEVLGDKMRKFNNVYVKNLSEEIDDEKLRDMFEPYGKIISAKIVCDEHGSRGYGFVD
FETEEAARIAIEKVNGMLLNGKQVFVERFMSRQERLEVLGDKMRKFNNVYVKNLSEEIDD
EKLRDMFEPYGKIISAKIVCDEHGSRGYGFVDFETEEAARIAIEKVNGMLLNGKKVFVER
FMSRRERLEVLGDKMRKFNNVYVKNFSEDIDDEKLRDMFEPYGKIISAKVMTDDSSGKGK
GFGFVSFEDPEAAEKAVEALNGNEKFGKVLFVGRAQKKEAQAELKEKFERIEMERINRYQ
GVNLYVKNLDDNIDDKRLRKEFAQFGTITSAKVMTEGGRSKGFGFVCFSSPEEATKAVTE
MNGRIVVAKPLYVALAPRKEDRKAHDASQCMQRITSMRMQAPPQAVIAQGQDPLTATMLA
TAPPQERKQMLGERLFPLISHMFPDLAGKITGMLLEIDNSELLHLLESQESLEAKVKEAV
AVLQVYQAKETATGTKPAE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggctgattgttgcagggcgtctggtgcagacagatgtaacacaggtatcggag
aaccagtttctattcaacatccctgatgcagatgacattaaccacttagtcatttttatg
actggacaaagtccatttcctgatggtcttggtgctgctgtgtatttctcgtttcccaac
ccccaaggtcaagcctgggctctgcttggacacattactaacacaaaaccaagtgcaata
ttcaaaatcaccaacatcaagaaaagctctatgatggatggaaacccctttgcttccatc
atgccacatgtgtctcacatgggccaggtgggaatctcagtcgagcccctctcccagttg
tctcaacagacccctgaggctggtacaagcgtctccaagattgtttgtgatgaacatgga
tctagaggctatggttttgtcgattttgagacagaagaagctgcaaggatagctatagag
aaggtcaatggcatgttgctgaatggaaagcaagtgtttgtagagcgtttcatgagcagg
caagaaagactagaagttttaggtgacaaaatgagaaaattcaacaatgtttatgtgaaa
aacttaagtgaagaaatcgatgatgagaaattgagggatatgtttgaaccttatggcaag
atcatcagtgcgaagattgtttgtgatgaacatggatctagaggctatggttttgtcgat
tttgagacagaagaagctgcaaggatagctatagagaaggtcaatggcatgttgctgaat
ggaaagcaagtgtttgtagagcgtttcatgagcaggcaagaaagactagaagttttaggt
gacaaaatgagaaaattcaacaatgtttatgtgaaaaacttaagtgaagaaatcgatgat
gagaaattgagggatatgtttgaaccttatggcaagatcatcagtgcgaagattgtttgt
gatgaacatggatctagaggctatggttttgtcgattttgagacagaagaagctgcaagg
atagccatagagaaggtcaatggcatgttgctgaatggaaagaaagtgtttgtagagcgt
ttcatgagcaggcgagaaagactagaagttttaggtgacaaaatgagaaaattcaacaat
gtttatgtgaaaaacttcagtgaagatatcgatgatgagaaattgagggatatgtttgaa
ccttatggcaagatcatcagtgcgaaggtcatgacagacgattcctcaggaaaaggcaaa
ggttttggttttgtcagttttgaagatcccgaggctgctgaaaaggctgtggaggctctg
aatggaaatgaaaaatttggtaaagtgttgtttgtgggacgtgctcagaagaaagaagcc
caggctgagctgaaggagaagtttgagcgcatcgagatggagaggataaacagataccag
ggagtcaacttgtacgtcaagaatctggatgacaacatcgatgataagcgcttgagaaag
gagtttgcacagtttggcaccatcaccagtgccaaggtgatgactgaaggtggtagatca
aagggctttggatttgtgtgctttagttcccccgaggaggccaccaaagctgtcactgaa
atgaatggaaggatcgttgtggctaaacccctgtacgtggctcttgcaccaagaaaggag
gaccgcaaagcccatgatgcctcccagtgcatgcaacgcattacaagcatgcgtatgcag
gcacctcctcaggctgtgattgcccagggacaggatccattgacagccaccatgttggcc
actgctccaccccaggagcggaagcagatgttgggagagcgcttgttcccgctcatctca
cacatgttccccgatctggccggcaaaatcaccggcatgttgcttgaaattgacaactcc
gagttgctgcacctgttggaatcacaggagtctctggaggccaaggtcaaagaagctgtt
gctgtattgcaagtttaccaggctaaggaaacagcaactggcaccaaacctgctgagtaa
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