Crassostrea virginica (eastern oyster): 111138352
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Entry
111138352 CDS
T09197
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX19A-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03013
Nucleocytoplasmic transport
cvn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111138352
03015 mRNA surveillance pathway
111138352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvn03019
]
111138352
Enzymes [BR:
cvn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111138352
Messenger RNA biogenesis [BR:
cvn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111138352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111138352
NCBI-ProteinID:
XP_022345987
UniProt:
A0A8B8F1C8
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Position
5
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AA seq
531 aa
AA seq
DB search
MADLDWGAAVDSQEQTLTTQTTVPGEQSLNWAEEAEKQALADEINRIAIDKNRPVPKSPS
APAQNXPAQTRPAPPPQGAGAFAAATPPSQEGAGASGDDEENAATKEDSALLRKLIHSKL
VSTKXDLEVLQKDPNSPLYSVKSFEALNLKKELLDGIYNIGYNTPSKIQETALPXLLADP
PVNMIAQSQSGTGKTAAFVLTMLSRVDTNQPYPQCLCIAPTYELALQIGKNVEDMGKFMK
DLKIIYAVRGERCDGKGTKLNGHLIIGTPGTVSDWALKLRFFDLKKINVFVLDEADVMIA
TQGHQDQSIRIQRGLRKDCQMLLFSATYEDEVMRFAQAVIPNNPIVIRLRREEQSLDNIK
QYFIECADQEGKFQALSNIYGSISIGQSMIFCATRRTAAWLAEKMVKEGHAVGLLSGDLS
IEQRAAIINRFKDAKEKVLITTNVTARGIDVEQVTVVVNFDLPLTQDYKPDFETYLHRIG
RTGRFGKKGLAINMVDNRQSFATLKAIEKYFGRKIEKLNAEDMDEVEKIGS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttggactggggagctgctgttgacagccaggagcaaacactgacaactcag
actacagtcccaggggaacagtccttaaactgggcagaagaagcagagaagcaggcccta
gctgacgagataaatagaatagcgattgacaaaaacagacctgtccccaaatctcccagt
gcacctgctcagaacnctcctgcccagacaagaccggccccaccccctcagggggcaggg
gcattcgccgcggccactcccccctcccaggaaggagccggagcatctggagatgatgaa
gaaaacgctgcaaccaaagaagattctgctctcctcagaaagttgattcattcaaagctt
gtctccacaaagncagacttagaagttctacagaaggaccccaactctccactttactct
gtcaaatcttttgaagcactaaatctgaaaaaggagctactagatggaatttacaacatt
ggatacaacacaccctccaaaatccaggaaacagctctccccngtcttcttgctgatccc
cctgtaaatatgattgctcagagtcagagtggaaccgggaagactgcagcatttgttttg
accatgctgagtcgagtggacaccaatcagccataccctcagtgcctctgtattgctcct
acgtatgagttagctctgcagattggaaaaaatgtggaagacatgggaaaattcatgaaa
gatctgaaaattatttatgcagtgagaggagagagatgtgatggaaaggggacaaaattg
aacgggcatttaatcattgggaccccagggacagtctctgactgggcacttaagttgaga
ttttttgacctgaagaagataaacgtatttgtgttggatgaagcagatgtgatgatagct
acacaaggccatcaggatcagtccatcaggattcagaggggactacgaaaggattgtcag
atgttgctgttttctgccacttacgaggatgaagtcatgagattcgcacaagctgtgata
cccaataaccccatcgttatacgcttacgtcgggaggaacagtctctggacaatatcaaa
cagtacttcattgagtgtgctgatcaggaggggaagttccaggctttgtctaacatttac
ggttcaatatcaataggacagtccatgattttctgtgctacaagaagaacagcggcttgg
ctggctgagaaaatggtgaaagagggacatgcggtaggtctactgagtggagatttgtct
attgaacagagagcagccataatcaatcgattcaaagatgccaaggaaaaagttctcatc
accaccaatgttacagccagaggtattgatgtggaacaggtcacggttgttgtgaacttt
gatctccctctgacccaggactataaacctgactttgagacctacctccatcgaattgga
agaacggggcggtttggaaaaaagggcttggcaataaacatggttgataatcgacagtca
tttgcaacattaaaggccatcgaaaaatatttcgggcgcaaaatagaaaaactgaatgca
gaggatatggatgaagtagagaaaattggaagttaa
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