Crassostrea virginica (eastern oyster): 111138391
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Entry
111138391 CDS
T09197
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cvn
Crassostrea virginica (eastern oyster)
Pathway
cvn03040
Spliceosome
cvn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111138391
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111138391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvn03041
]
111138391
04121 Ubiquitin system [BR:
cvn04121
]
111138391
03400 DNA repair and recombination proteins [BR:
cvn03400
]
111138391
Enzymes [BR:
cvn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111138391
Spliceosome [BR:
cvn03041
]
Complex B
Other components
Prp19 complex
111138391
Complex C
Prp19-CDC5 complex
111138391
Ubiquitin system [BR:
cvn04121
]
Ubiquitin ligases (E3)
U-box type E3
111138391
DNA repair and recombination proteins [BR:
cvn03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111138391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Prp19
WDR55
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
U-box
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Nup120_160
zf-Nse
eIF2A
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
ATG16
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
111138391
NCBI-ProteinID:
XP_022346034
UniProt:
A0A8B8F1B0
LinkDB
All DBs
Position
5:complement(30594044..30600092)
Genome browser
AA seq
509 aa
AA seq
DB search
MALCCAISNEVPEQPVISPVSGHIYERRLIEKYIKENGSDPMNGEKLGIEMLVDVKASAL
VKPRPPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGITAGAYIAPAPQPTYGAEAGPESAIQPMEETGMSDEVLQKL
QDKATLLTAERKKRGKTVPEGLATTEDIKSYKQLASHTGLHSASVPGILALDICLKDTSK
IVTGGNDKNAVVFNKDTEQVMAILKGHSKKVTSVIYHPEDELVFTASPDATIRVWGVETA
QCGQVIRAHDAPVTGISLHATGDYLLSSSTDMHWAFSDIRQGRVLTKVSDPASQHALTCA
QFHPDGLIFGTGTEDSMIKIWDLKGRLNVANFPGHQGPITSIAFSENGYYLATSAEDSVV
KLWDLRKLKNFKTLQLTDKYEVRSLAFDQSGTYLSVAGSDVRVYLCKQWQELISFNDHTA
MATGVRFGHNATFVASGSMDRSVKFFGIP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgcgattagtaatgaggttcctgaacagccagttatctccccggta
tctggtcacatctatgagagacgtctcattgaaaagtatataaaagaaaatggatctgat
ccaatgaatggggagaaactaggaatagaaatgctggttgatgtcaaagcatcagcactt
gtgaaacccagacccccatcagcaacaagtataccagcaatactcaaatctctacaagat
gaatgggatgccgtgatgttacacagtttcaccctgagacagcagctgcagacagctaga
caggaactctcccatgccctatatcaacatgatgctgcatgtcgagtgattgctcgttta
accaaagaagttactgctgccagagaagctttggccaccctcaaacctcaagcaggaatc
acagccggtgcctacattgcgccagctcctcagcctacctatggtgcagaagctggacca
gaatcagccattcaacccatggaagaaacgggcatgagtgatgaagtgttgcaaaaattg
caagacaaagccacacttcttacagcagagaggaaaaagagaggaaaaactgttccagag
ggacttgcaacaacagaagatatcaaatcttacaaacaacttgcctctcatacaggattg
cacagtgccagtgttcctggaattttggccctggacatctgtttgaaggacacctccaaa
attgttacaggtggcaatgacaaaaatgctgttgtattcaacaaggacacagagcaggtt
atggccattctcaaaggtcattcaaagaaggtcaccagtgttatttaccatccagaagat
gagctggtgttcactgcctcaccagatgccaccattcgtgtatggggagtggagactgct
cagtgtggacaggtgatcagagcccatgatgcccctgtcaccggaatcagtctgcacgcc
actggtgactacctgctgagttcatcaacagacatgcactgggccttttctgacatcaga
caaggacgagtattaaccaaagtcagtgatcctgcatctcagcatgccctcacctgtgcc
cagtttcatcctgatggactcatttttggcaccggtactgaagattccatgataaaaatt
tgggatttgaaaggaagactgaatgtggccaacttccctggccaccaaggaccaatcacc
agcatcgctttctcagaaaatggatactacttggctacatcagctgaagattctgttgtc
aaactttgggatttgagaaaactgaagaatttcaagactcttcaacttacagacaaatat
gaggtgaggtccctggcctttgaccagagtggaacatacctcagtgtagctggatccgat
gtcagggtgtacctgtgtaaacagtggcaggagctgatttcattcaatgaccacactgct
atggcaaccggagtaaggtttggacacaatgcaacatttgtggcatctggtagcatggat
agatcagtcaaattctttggaattccatga
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