Campylobacter volucris: CVOL_0440
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Entry
CVOL_0440 CDS
T03558
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cvo
Campylobacter volucris
Pathway
cvo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cvo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVOL_0440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvo03021
]
CVOL_0440 (rpoC)
03400 DNA repair and recombination proteins [BR:
cvo03400
]
CVOL_0440 (rpoC)
Enzymes [BR:
cvo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVOL_0440 (rpoC)
Transcription machinery [BR:
cvo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVOL_0440 (rpoC)
DNA repair and recombination proteins [BR:
cvo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVOL_0440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF7660
Motif
Other DBs
NCBI-ProteinID:
AJC93775
LinkDB
All DBs
Position
406505..411058
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKFKPIEIKEDGRPRDFEAFQLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRFKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVENPGEAYYDNENSKKVEFCDVLNEEQYLNLMQR
YESSGFKARMGGEVVRDLLANLDLVALLNQLKEDIASTNSEAKKKTIIKRLKVVENFLNS
NLNSNTNSDEVVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTR
LKRLMELDAPEIIIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRF
RQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKPHLLAKLEEKGYATTVKQAK
KMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFN
ADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGRSVTVPSQDMVLGIYYLSLEKD
GAKGEHKICTGIEEVMIALEAKSLDIHASIKSVVDGRKVTTTAGRLIIKSILPDFVPENM
WNKVMKKKDIAALVDYVYKVGGLEVSASFLDKLKDLGFEYATKAGISISIADIIVPEQKQ
KNIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNILSKDMMDLIKKDKEGFNSI
YMMADSGARGSAAQISQLAAMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKG
LADTALKTANAGYLTRKLIDVAQNVKVTIDDCGAHEGVEINEITADGVVIETLEERILGR
VLAENIIDSITNEILFSEGTLIDEEKAKIIVESGVKSVSIRTPITCKAKKGVCSKCYGIN
LGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVVAHKEGFVRFYN
LNTYKDRQGKTIVANHRNAAVLLVEPKIKAPFKGVINVEYAYEDVIVSIKNKNNESKFIL
RKYDLAKANELAGVSGNIEGKLYIPYNNGDEVGENESIVEVIKEGWNIPNRIPYASELLV
NDGDPITQDIIAGAKGTLKFYILKGDGLDRIKNLKKGDIVKEKGVFVVIADENDREAKRH
YIPRDSVIEFNDSSVISDPKTIIAKSSKEDKVVIAEWDAYNNTVIAEINGTISFEDIESG
YSADEQIDEATGKRSLVINEYLPSGVRPAILVLGDKGKMIRYQLEPKTVIYVNDGDKVKQ
ADILAKTPKAATKSKDITGGLPRVSELFEARKPKNTAVIAEIDGVVRFDKPLRSKERIII
QAEDGSSAEYLIDKSRRIQVRDGEFIHAGEKLTDGVVSSHDVLRILGEKALHYYLISEIQ
QVYRGQGVVISDKHIEIIVSQMLRQVKIVDSGHTNFIVGDLVSRRKFREENERILKYGGE
PAVAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIP
VGTGLYGEQNLKLKQQN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatttaaacctatcgaaataaaagaagatggcagaccaagagactttgaagct
tttcaattaagacttgcaagtccagaaaaaattaaatcttggtcttatggtgaagtaaaa
aaacctgaaaccattaattatagaactttaaagcctgaaagagatggtttgttttgtgca
aagatatttggtcctgttagagattatgagtgtctttgtggtaaatataaaaaaatgcgt
tttaagggcattaaatgtgaaaaatgtggtgtagaagttacaagctcaaaagtgcgtcgt
tctagaatggggcatattgaattagtaactcctgtagctcatatttggtatgtaaattct
ttacctagtcgtattggaactttacttggtgttaagatgaaagatttagaacgcgtattg
tattatgaagcgtatatagttgaaaatccaggtgaagcatactatgataatgaaaattct
aaaaaagttgaattttgtgatgttttaaatgaagaacaatatttaaatttaatgcaacgc
tatgaaagtagtggttttaaagctagaatgggtggagaagttgttagagatttactagca
aatttggatcttgttgcgcttttaaatcaattaaaagaagatattgcttcaactaattct
gaagcaaagaaaaaaactattattaaacgcttaaaagtagttgagaattttttaaatagt
aatttaaatagtaatacaaatagtgatgaagtagtgccaaatcgccctgaatggatgatg
attacaaatttaccagttttaccaccagatttaagacctttagtagctttagatggtgga
aaatttgcagtttctgatgtgaatgatttatatagaagagttattaatagaaatactcgt
ttaaaaaggctgatggagcttgatgcgccagaaatcattataagaaacgaaaaaagaatg
cttcaagaggctgttgatgctttatttgataatggtagaagagcaaatgctgtaaaaggt
gcaaacaagcgtccattgaaatctttaagcgagattataaaaggtaaacaaggtcgtttt
agacaaaatcttttaggtaaaagggtggatttttcaggtcgtagcgttattgttgtgggt
ccaaaacttagaatggatcaatgtggtcttcctaaaaaaatggctttagaattatttaaa
ccacatttattagcaaagcttgaagaaaaaggttatgcaactactgtaaaacaagctaaa
aaaatgatagaaaacaaaactaatgaagtttgggagtgtttagaagaggtagttaaaggt
caccctgttatgcttaatcgtgctccaactcttcataagctttctatacaagcatttcat
ccagtacttgttgaaggtaaagccatacaacttcatcctttagtttgtgctgcttttaat
gctgactttgatggtgatcaaatggctgttcatgtgcctttatctcaagaagcaattgct
gaatgtaaagtgttgatgctttcttctatgaatatattattacctgctagtggtagatca
gtaactgttccatctcaagatatggttttaggaatttattatttatctttagaaaaagat
ggtgctaaaggtgagcataaaatttgcactggtatagaagaagtaatgatagctttagaa
gctaaatctttagatatacatgcaagtattaagagtgtcgttgatggtagaaaagttact
acaactgctggtagattgattattaaatctatcttacctgattttgttccagaaaatatg
tggaataaagttatgaagaaaaaagacattgctgctttggttgattatgtgtataaagta
ggcggattagaagttagcgcaagctttttagataagcttaaagatcttgggtttgaatat
gctacaaaagcaggtatttcaatatcaatagcagatataatcgtgccagagcaaaaacaa
aaaaatattgatgaagcaaaaaaacaagttagagaaattcaaaattcatataatttagga
cttatcacttcaggtgaaagatacaataaaatcattgatatttggaaaagtactaataat
attctttctaaagatatgatggatttaatcaaaaaagataaagaaggatttaattctatt
tatatgatggctgattctggtgctagaggttctgctgctcaaatttctcagctagctgct
atgagaggtttgatggcaaaacctgatggttctattatagaaacgcctattatctcaaat
ttccgtgaaggacttaatgttcttgagtattttatttctactcatggtgctagaaaaggt
ttggcagatactgctttaaaaacagcaaatgcgggttatttaacaagaaaacttatagat
gttgctcaaaatgtaaaagttactatagatgattgtggtgcacatgaaggtgttgaaatc
aatgaaattacagcagatggtgtggtaattgaaactttagaagagagaattttaggaaga
gttttagctgaaaatattattgattctattacgaatgaaattttattttctgaaggcact
ttgatagatgaagaaaaagcaaaaattatagttgaaagtggcgtaaaaagtgtaagcata
agaacccctatcacttgtaaagctaaaaaaggtgtttgttcaaaatgctatggtattaac
ttaggcgaaggaaagcttgtaaaaccaggtgaagcagtaggtattatctcagctcaatca
attggagagcctggaactcagcttactcttagaactttccatagtggtggtacagcaagt
actgatttacaagatcgtcaagttgtggctcataaagaaggttttgtgagattttataat
ttaaatacttacaaagatagacaaggtaaaactatcgttgcaaatcaccgcaatgctgct
gttttacttgtagaaccaaaaattaaagcgccttttaaaggtgtgattaatgttgagtat
gcttatgaagatgtgattgtaagtataaaaaataaaaataatgaatcaaaattcatctta
agaaaatatgatctagctaaagctaatgagcttgctggagttagtggaaatattgaagga
aaattatatattccatataacaatggagatgaagttggtgaaaatgaaagtattgtagaa
gtcatcaaagaaggttggaacataccaaatcgtattccatatgcaagtgaattacttgta
aatgatggcgatccaataactcaagatatcattgctggtgcaaaaggaactttgaaattt
tatattcttaaaggtgatggtttagacagaattaaaaacctcaaaaaaggtgatatagtt
aaagaaaaaggtgtatttgttgtaattgctgatgaaaatgatcgtgaagcaaaaagacat
tatataccaagagattctgtgattgaatttaatgatagctcagtgattagtgatcctaag
actattattgctaaatcaagcaaagaagataaagtagtaattgctgaatgggatgcttat
aataatactgttattgctgagataaatggaactatcagctttgaagatatagaatcaggt
tatagtgctgatgagcaaattgatgaagcaacaggtaagagatctttagtgataaatgaa
tatttaccaagcggagtgcgccctgctatcttagttttaggagataaaggaaaaatgatc
cgttatcaattagagcctaagactgttatttatgtaaatgatggcgataaagttaagcaa
gctgatattttagctaagactccaaaagctgctacaaaatcaaaagatattacaggtggt
cttccaagagtttcagaattatttgaagcaagaaaaccaaaaaatactgcggttatcgct
gagatagatggtgttgtaagatttgacaagcctttaagatctaaagaaagaattatcatt
caagctgaagatggcagtagtgcagaatatttaattgataaatcaagacgcattcaagta
agagatggagaatttatccatgcaggtgagaaattaaccgatggtgttgtttcaagccat
gatgtacttagaattttaggtgaaaaagcgttgcattattatcttatatcagaaattcag
caagtttatcgtgggcagggtgttgtaatttcagataaacatattgaaattatagtttct
caaatgttaagacaagtaaaaatagtagatagtggtcatactaattttatagttggagat
ttggtttcaagaagaaaattcagagaagaaaatgagagaattttaaaatatggtggagaa
ccagctgtagctgagccagttttacttggtgtaacaagagcagctataggtagcgatagt
gtgatctctgctgcttctttccaagaaacaactaaagttttaacagaagctagtattgct
ggtaaatttgattacttagaagacttaaaagaaaatgttattttaggtcgtatgatacct
gttggtactgggctttatggagagcaaaatttaaaacttaaacagcaaaattag
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