Campylobacter volucris: CVOL_1013
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Entry
CVOL_1013 CDS
T03558
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvo
Campylobacter volucris
Pathway
cvo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVOL_1013 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvo03400
]
CVOL_1013 (mfd)
Enzymes [BR:
cvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVOL_1013 (mfd)
DNA repair and recombination proteins [BR:
cvo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVOL_1013 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AJC94317
LinkDB
All DBs
Position
complement(969668..972604)
Genome browser
AA seq
978 aa
AA seq
DB search
MQANLYEFLQANQAELIICEDDKEADELAQVCLYLDFKTFVLPDFRAHFGSDLRSFSKEL
FEICKVLNSYHKEIHKKILISPIRTILQKLPGKNNLKNIVLKKNSLIRLEKFKEDILHSG
YEFVDIVQDKGEVSIRGEIIDIFAINEEQPYRILLFSDEIESIRYFDINTQKSIPNELSS
IEICPFLSNFTQEQYDILQEKIQNFESQSIINDVNSLGFWCIDDFYDYLNLNFVSIKKFQ
VEEFEEDISIINQKIIPQAKICKDLISVYNQDFFSFHKDKKILILAKNEVLFKALQIEET
SNITLKMSDIRLNLIIQDGMIISLNQKQKHKKIKKASLIIDELRVGDYVVHEDYGIAKFL
GLEKIIISGAQKEFVALGYLNNDKLLLPVENLYMIDKYIGASSGVPVLDKLGKGTFLKLK
EKLKEKLFAIASNIVSLAATRALIKAKVLDISEKLQDEFISKAGFLYTKDQELVCKEINQ
DLKSSRVMDRLLSGDVGFGKTEIAMNAMFTCVKSDFTALFFVPTTLLSSQHYKTLKKRFD
PFEIDVFKLDRFTNSKEKKQILQILKEKKPCVVIGTHSLLSVECENLGLVVIDEEHKFGV
KQKEKLKELSKNSHILSMSATPIPRSLNQALSSLKSYSVLQTPPQDRLDVRTFVRESNDA
LIKEAISRELRRAGQIFYIHNHIASINESKKYLLDLFPNLKILILHSKIDAKTTEEQMLK
FENKEYDLLLCTSIVESGIDLANANTIIIENADRFGMADLHQLRGRVGRSFKQGYCYFLI
EDKEKITKDSLKRLASLESNSFLGSGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYL
KMLEDEINKLSKNEIVKEKKIDLKLNINAFINSDYISEDRLRLELYRRLSKCASVNEVYE
IEGEMNDRFGKLDIYTKQFLDLIIIKILASKNYKTISNFEQNICFVKDDESKEVIKARSK
DDDDIIETILTHLRKNVS
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaatttatatgaatttttacaagcaaatcaagctgagcttataatttgtgaa
gatgataaagaagcagatgaattagctcaagtttgcttgtatttagatttcaaaactttt
gttttgcctgattttagagcgcattttgggagtgatttgcgttctttttcaaaagaatta
tttgaaatttgcaaagttttaaattcataccataaagaaatccataaaaaaattttaatt
tctccaattagaactattttacaaaaattacctgggaaaaataatcttaaaaatatagtt
ttaaaaaagaattctctcattagactagaaaaatttaaagaagatattttacatagtgga
tatgaatttgtagatatagttcaagataaaggtgaagtttctattcgcggtgaaattatt
gatatttttgctattaatgaagagcaaccttatagaattttattattttcagatgagata
gaaagtattagatattttgatatcaatacgcaaaaatctataccaaatgaattatctagt
atagaaatttgtccttttttgagtaattttactcaagaacaatatgatattttgcaagaa
aaaattcaaaattttgaaagtcaaagtattatcaatgatgttaattctttaggattttgg
tgtattgatgatttttatgattatttgaatttaaattttgtaagtattaaaaaatttcaa
gttgaagaatttgaagaagatattagcattatcaatcaaaaaattataccacaagctaaa
atttgtaaagatttaatcagtgtttataatcaagattttttttcttttcataaggataaa
aaaattctcattttagctaaaaacgaggtattgtttaaggctttacagatagaagaaact
tcaaatatcactttaaaaatgagcgatattagattaaatttaatcatccaagatggtatg
attatttcacttaatcaaaaacaaaaacacaaaaaaattaaaaaagcaagcttgattatc
gatgagcttagggtgggtgattatgtagtgcatgaagattatggtatagctaaattttta
ggacttgaaaaaatcattatcagcggtgctcaaaaagaatttgtagctttgggatattta
aataatgataaattgcttttgcctgttgaaaatttgtatatgattgataaatatataggt
gcaagtagcggtgtgcctgtgctagataaacttggaaaaggaacatttttaaaactcaaa
gaaaaactcaaagaaaaactttttgcaattgcttcaaatattgtttctttagctgccact
agggctttgattaaggctaaagttttagatatatctgaaaaattacaagatgaatttata
agcaaggcaggatttttatacactaaagatcaagaattagtatgtaaagaaattaatcaa
gatcttaaaagttctcgtgtgatggatagattgttaagcggtgatgtgggttttggaaaa
acagaaattgctatgaatgctatgtttacttgtgttaagagtgattttacagcattattt
tttgtgcctactaccttgctttcttcgcagcattataaaactttaaaaaaaaggtttgat
ccttttgaaattgatgtttttaaactagatcgttttacaaactcaaaagaaaaaaaacaa
attttacaaattttaaaagaaaaaaaaccatgcgtggtaattggtacacattcgcttttg
agtgtagagtgtgaaaatttaggtttggttgtgattgatgaagaacataaatttggcgta
aaacaaaaagaaaaattaaaagagcttagtaaaaattctcatattctttcaatgtcggca
acacctataccaaggagtttaaatcaagccttgagttctttaaaatcttatagtgtttta
caaaccccacctcaagatcgtttggatgtaagaacttttgtaagagaaagtaatgatgct
ttaattaaagaagcaatttctagagaattaagaagagcagggcaaattttttatatacac
aatcatatagcaagcattaatgaaagtaaaaaatatcttttagatttatttccaaattta
aaaattttaattttacattctaaaattgatgctaaaaccaccgaagaacaaatgcttaaa
tttgaaaacaaggaatatgatttattgctttgtacttctatagttgaaagcggtattgat
ctagcaaatgcaaatactattataattgaaaatgcagatcgttttggtatggctgatttg
catcaattaagagggcgagtagggcgtagctttaagcaaggatattgttattttttaatt
gaagataaagaaaaaatcaccaaagattccctaaaaagacttgctagtttagaaagcaat
tcttttttaggctcaggatcaattttggcttatcatgatttagaaattcgaggtggtggg
aatttattaggcgtggatcaaagtgggcatatagagcaaattggctatagtttgtatctt
aaaatgcttgaagatgagattaataagctaagtaaaaatgagattgttaaagagaaaaaa
attgatttaaaattaaatatcaatgcttttataaatagtgattatattagtgaagatcgt
ttgcggttagaactttatagaagacttagtaaatgtgctagtgtaaatgaagtgtatgag
atagaaggcgaaatgaatgatcgctttggaaaattagacatttatactaaacaattttta
gatttaataataattaaaattttagctagtaaaaactataaaactatcagtaattttgaa
caaaatatttgttttgtaaaagatgatgagagtaaagaagtgattaaagctagaagcaaa
gacgatgatgatattatcgaaaccatacttactcatcttaggaaaaatgtatcatga
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