Chlorella variabilis: CHLNCDRAFT_134932
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Entry
CHLNCDRAFT_134932 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K14327
regulator of nonsense transcripts 2
Organism
cvr
Chlorella variabilis
Pathway
cvr03013
Nucleocytoplasmic transport
cvr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CHLNCDRAFT_134932
03015 mRNA surveillance pathway
CHLNCDRAFT_134932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_134932
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CHLNCDRAFT_134932
mRNA cycle factors
P-body specific factors
CHLNCDRAFT_134932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
17354230
NCBI-ProteinID:
XP_005846965
JGI:
ChlNC64A_1_134932
UniProt:
E1ZH54
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MGQEGPPPAADGGGGEAASLEALQDATQKINEAAEALERRQQLRALNLNPERPGEDALKR
LDSSMKRNSALIRKLKALSEESRRSVLDDISKTNQSKRGAAALAEVLDRPLPELRQAVTR
IVAAGGEGEAGAAPADLQAQQVFEDEETRAFYESLVDLRAVVPAVLLGDKGKEAAGEQEA
AAGAEQQADGEGGGAAGAAAGAAAGTAAAAGAAAPKGAGVPASASGASLPGGKQEPSYEE
TLEGKGAGEEAREPSQLDLLLGRLPGCVSKELADEAAVAFCYLQNKGARKRLVRALAAEL
PLGALALLPYYARIAATLAQVFPDVAQGVVAHLEAEFGTLQRSKDATARTLEPRVRNMRY
VAELAKFRLFPHGAAFSMLKQLLDDFSGHNIDAACAMVETAGRFFYRLPETSTRMSNFLE
VMMKLRNARNLDARQSGLVDSAYFAVKAADKGARRRQRPPQHEYIRHLVYERLPLGQVTR
VMKKLRRLPWAQYEGYLLKTLLRASHKGRFSQIPHIASLAAGLSRYHPSLGVALVDEVLE
AVEAGLETPDAGFYQRRVAAVRLLGELYNYKLVNSQVIFATLHLILAYGHEQGTPPEVSR
RLDPPSNFFRIRLCCTLLEVCGQYFTRGPSRRKLDRLLPAFQRYLLAKPPLPLDVEFDVQ
DLWDHLRLTPPQYDSYEAACAAVAELEAAEAAAAASGLAPIEEESDGEGPEDGGDAGSDA
GSDAEQDDGDSQAGLDGDEEDVARLESEGEEEGVRMVGPALQPAEVDEDFEREFCQLMLD
HQGRPAAAGGGRQLGPGGAGPAGGPGLPPAAHAHGQGGGEAGEAEAVSFRVMMKRGGRDD
RTRELHIPLTAGMAAHLRQKEEEEAAEKAELKRLVLEANKRDLQEQQDALRAAQQQRRPG
ARGYYGRGGGRGGGGGLF
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaggagggccctcctcccgcagcagacggcgggggaggggaggccgcctcctta
gaggccctgcaggatgcgacccagaagatcaatgaggcggcagaggcgctggagcggcgg
cagcagctgcgcgccctcaacctcaaccccgagcggccgggcgaggatgccctgaagcgg
ctggactccagcatgaagcgcaactctgcgctcatccgcaagctcaaggcgctgagcgag
gagtcgaggcggtctgtgctggacgacatctccaagaccaaccagagcaagcgcggggcg
gcagcgctggcggaggtgctggaccggccgctgccggagctgcggcaggcggtgacgcgc
atcgtggcggcaggaggggagggggaggccggcgccgcgcccgcagacctgcaggcgcag
caggtgtttgaggatgaggagacgcgagccttctacgagtctctggtggacctgcgggcc
gtagtgcctgcggtactgctcggggacaagggcaaggaggcggcaggggagcaggaggcg
gcggccggcgccgagcagcaggcagatggggagggcggcggtgcggcgggggcggccgcg
ggggcggccgcaggcacggcggcggcggcgggggcggcggcgcccaaaggggcgggcgtg
ccggcgtctgccagtggcgcctcgctgcccggcggcaagcaggagccgagctatgaggag
actttagagggcaagggggcgggggaggaggcgcgggagcccagccagctggacctgctg
ctggggcgcctgcccggctgcgtgagcaaggagctggctgacgaggcggcggtggccttc
tgctacctgcagaacaagggcgcccgcaagcgcctggtgcgcgcgctggcggcggagctg
cccctgggcgcgctggcgctgctgccatactacgcccgcatcgccgccacgctggcgcag
gtcttcccggacgtggcgcagggcgtggtggcgcacctggaggccgagtttggcaccctg
cagcgcagcaaggacgccaccgcgcgcacgctggagccgcgcgtgcgcaacatgcggtac
gtggccgagctggccaagttccgcctgttcccgcacggcgccgccttctccatgctcaag
cagctgctggacgacttctcggggcacaacatcgacgccgcctgcgcgatggtggagaca
gcggggcgctttttctaccggctgcccgagacctccacccgcatgtccaactttttggaa
gtcatgatgaagctgcgcaacgcccgcaacctggacgcccgccagagcggcctcgtcgac
tccgcctactttgcggtcaaggcggcggacaagggggcgcgtcgcaggcagcgcccgccg
cagcacgagtacatccgccacctggtgtacgagcggctgccgctggggcaggtcacgcgg
gtgatgaagaagctgcggcggctgccctgggcgcagtacgaagggtacctcctcaaaacc
ctgctgcgcgcctcccacaagggccgcttctcccagatcccgcacatcgccagcctggcg
gcgggactgtcgcggtaccaccccagcctgggcgtggcgctggtggatgaggtgctggag
gcggtggaggcggggctggagacgccagacgcgggcttctaccagcgccgcgtggcagcg
gtacgcctgctgggcgagctgtacaactacaagctggtcaactcccaggtcatctttgcc
accctgcacctcatcctggcctacggacacgagcagggcacgccgcccgaagtcagcagg
cgcctggaccccccctccaacttcttccgcatccgcctctgctgcaccctgctggaggta
tgcgggcagtacttcacgcgcggcccgtcccgccgcaagctggaccgcctcctccccgcc
ttccagcgctacctgctggccaagccgccgctgccgctggatgtggagtttgatgtgcag
gacctgtgggaccacctgaggctgacccctccgcagtacgacagctacgaggccgcctgc
gccgcggtggcggagctggaggcggccgaggcggcggccgcggccagcgggctggcgccg
atcgaggaggagagcgacggcgaggggccggaggacggcggcgatgccggctctgatgcg
ggcagcgacgcggagcaggacgatggcgacagccaggcggggctggacggtgatgaggaa
gatgtggcgcggctggagagcgagggggaggaggagggcgtgcgcatggtgggccccgcc
ttgcagccggccgaggtggacgaagactttgagcgcgagttctgccagctcatgctggac
caccagggccgccccgcagcagccggcggcggccgccagctgggccccggcggcgcgggg
ccggcgggggggcccgggctgccacccgcggcccacgcccatggtcagggcggcggcgag
gcgggggaggcggaggcggtgtcgttccgggtgatgatgaagcggggggggcgggacgac
cgcacccgggagctgcacatcccgctgacggccggcatggcggcgcacctgcggcagaag
gaggaggaggaggcggcggagaaggcggagctcaagcggctggtgctggaagcaaacaag
cgcgacttgcaggaacagcaggacgcactgcgagcagcgcagcagcagcggcggcctggc
gcgcgcggctattacggccgtggcggcggaaggggaggagggggagggctgttttga
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