Chlorella variabilis: CHLNCDRAFT_136728
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Entry
CHLNCDRAFT_136728 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_136728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_136728
Enzymes [BR:
cvr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CHLNCDRAFT_136728
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CHLNCDRAFT_136728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
17352971
NCBI-ProteinID:
XP_005845669
JGI:
ChlNC64A_1_136728
UniProt:
E1ZKY2
LinkDB
All DBs
Position
Unknown
AA seq
557 aa
AA seq
DB search
MTGLFLEEQRGSYLDDMEDRYREMLASSRAFVINQFGLSAFVWEDGAYRARTYNFHLFPR
PSEGIDKRFVCQASSIDFLASCGFDFNKSIYDGIGYMPVALRDARLASVDRPPRERSEVL
VRKAEDVAFVKDTVASVAEWLQGEDLELVLPAVNSYQRLLQYQELRRPQFGVADPPGFYR
VAAEEGNGFQLRLTRAAPGEAEAWEAEQRQKRVEAIHTAAGFAAVMEAMRDSGKPAVGHN
LAFDLSYSLHSYAQELPGSWAEYKQLVGRWFPGGVYDTKFLSTAATGFPLFCHLEEQVEA
FLQEAALRSVAASGGSSDGEAAELPLVEHAAGFERYKGAATEAFAHEAGYDAYMTGAAFA
CLMRLYEADAAGAGVGGFLAPPAEQQPAVEAVRHLCWRMNISRSDMPYAALQGEDPIPDR
SHIFYVHGWGEGQRVYGGELVRRLADSGLGQVRATLVEGGLGALVEVGDPEAVPGAADVL
RQRYPGWTVAPYSEYADKRQQQRAEAAPGRRANGGNKRPRVDAEAAAAASKKAVASAARG
GGDDGAEEGKWGRCTIM
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacggggctgttcctggaggagcagcgaggcagctatctggacgacatggaggatcgg
taccgtgagatgctggccagcagccgcgcctttgtgatcaaccagttcggcctgtcggcc
tttgtgtgggaggacggcgcctaccgcgcccgcacctacaacttccacctcttcccaagg
ccctctgagggcatcgacaagcgatttgtgtgccaggccagctccatcgacttcctcgcc
tcctgcggcttcgacttcaacaagtccatctacgacggcatcggctacatgccagtggcg
ctgcgtgatgcccgcctggcctctgtggaccgcccgcctcgggagcggtccgaggtgctg
gtgcgcaaggctgaggacgtggcgtttgtgaaggacacggtggcgtcggtcgcggagtgg
ctgcagggcgaggacctggagctggtactgccagctgtcaactcgtaccagcgcctgctg
cagtaccaggagctgaggcggccgcagtttggggtggccgacccgcccggcttctatagg
gtggcggcggaggaaggcaacggcttccagctgcgcctgacgcgcgccgcgccgggcgag
gcggaggcgtgggaggcggagcagcggcagaagcgcgtcgaggccatccacaccgcggcg
ggctttgcggcggtgatggaggcgatgcgcgacagcggcaagcccgccgtgggccacaac
ctcgcctttgacctctcctactccctccactcatacgcgcaggagctgccgggaagctgg
gcggagtacaagcagctggtggggcgctggttcccggggggcgtctacgacaccaagttt
ctttccactgccgccaccggctttccgctcttttgccatctcgaagagcaggtggaggcg
ttcctgcaggaggccgcgctgcggtcggtggcggccagcggcggcagcagcgacggcgag
gcggcggagctgcccttggtggagcatgcggccggtttcgagcggtacaagggagcggcg
accgaggcgttcgcgcacgaggctgggtatgatgcctacatgacgggagcggcctttgct
tgcctgatgcggctctacgaagccgacgcggcgggcgccggggtcggcggcttcctggcg
ccgcccgcggagcagcagccggcggtggaggctgtgcggcacctgtgctggcgcatgaac
atcagcaggtcggacatgccgtatgcggcgctgcagggcgaggatcccatccctgaccgc
tcacacatcttctatgtgcatggctggggcgagggccagcgcgtgtatggcggcgagctg
gtcaggcggctggcggactctgggctggggcaggtgcgggcgacgttggtggagggaggc
ctgggggcgctggtggaggtgggggaccccgaggcggtgccgggtgccgcggatgtgctg
cgccagcgctacccaggctggaccgtggcgccgtattcagagtatgccgacaagcggcag
cagcagcgtgccgaggcggcgccgggtcgccgcgccaatggcggcaacaagcggccgcgg
gtcgatgcggaggcggcggcggcggccagcaaaaaggcggtggcgtcggcggcgcggggc
ggcggcgacgacggtgcagaggaggggaagtgggggcggtgcaccatcatgtga
DBGET
integrated database retrieval system