Chlorella variabilis: CHLNCDRAFT_136793
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Entry
CHLNCDRAFT_136793 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03013
Nucleocytoplasmic transport
cvr03015
mRNA surveillance pathway
cvr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHLNCDRAFT_136793
09122 Translation
03013 Nucleocytoplasmic transport
CHLNCDRAFT_136793
03015 mRNA surveillance pathway
CHLNCDRAFT_136793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_136793
03041 Spliceosome [BR:
cvr03041
]
CHLNCDRAFT_136793
Enzymes [BR:
cvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHLNCDRAFT_136793
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CHLNCDRAFT_136793
Spliceosome [BR:
cvr03041
]
Complex C
Other components
EJC/TREX
CHLNCDRAFT_136793
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CHLNCDRAFT_136793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
MAM33
ResIII
Motif
Other DBs
NCBI-GeneID:
17352947
NCBI-ProteinID:
XP_005845689
JGI:
ChlNC64A_1_136793
UniProt:
E1ZL31
LinkDB
All DBs
Position
Unknown
AA seq
519 aa
AA seq
DB search
MVPPPYPPAGEEELLDYEEADDEAQAAEAGKAAEGAVKKGYVGIHSSGFKDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVISTLQQLEPVDGQVSVVV
LCHTRELAFQICHEYERFTTYMKNVRVGNFFGGLPIKQQREQLKDKDKCPHVIVGTPGRV
KGLADEKNLDMSHVRHFVVDECDKCLENIDMRADVQAIFKKTPHDKQVMMFSATLSSEIR
PVCKKFMRDPMEIYVDDEAKLTLHGLVQHYVMLNEDQKNRKLNDLLDALDFNQARASFLP
CCRRTLAGAETSWCQQHGLPNATALRTFRSCAAACHSALVESLGEELKYEKDNYAQPEEL
AAGPPAGFSLTETDGDTLMSLSKEHKGERVTIDVMVNDQPEEELVEDQSGALDADVGAVF
TASVTKGDQSLVFECKSDGQYFSVLHVSLEPAGGEEEESAYSGPVYEELDEKLQAHLEHY
LAERGVNEELGAYLLPLIHDKEQREYVRWLARVQAFVNA
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgcccccttacccccctgccggcgaggaggagctcctcgactacgaggaggcg
gatgatgaggcccaggcagctgaggccggaaaggcggccgagggagcggtcaagaagggc
tatgtgggcatccacagcagcggctttaaggacttcctgctgaagcccgagttgctgcgt
gccatccaggactgcggctttgagcacccatcggaagtgcaacacgagtgcatcccacag
gccatcctgggcatggacgtcatctgccaggccaagtcgggcatgggcaagacagccgtg
tttgtcatctccaccctgcagcagctggagcccgtggatggccaggtgtctgtggtggtg
ctgtgccacacccgcgagctcgcattccagatctgccacgagtacgagcggttcaccaca
tacatgaagaatgtgcgcgtgggcaacttcttcggcggcctgcccatcaagcagcagcgg
gagcagctcaaggacaaagacaagtgcccgcacgtcattgtgggcacgcccgggcgtgtc
aaggggctggccgacgagaagaatctggacatgagccacgtgcggcactttgtggtggac
gagtgcgacaagtgcctggagaacatcgacatgcgcgcagacgtgcaggccatcttcaag
aagaccccccacgacaagcaggtcatgatgttttcggccaccctttcctcggaaatccgc
cccgtgtgcaagaagttcatgcgcgaccccatggagatctacgtggacgacgaggccaag
ctgacgctgcacggcctggtgcagcactatgtgatgctgaatgaggaccagaagaaccgc
aagctgaacgaccttctggatgcactggacttcaaccaggcacgcgcctcctttcttccc
tgttgccgccgcacgctagcgggagcagaaaccagctggtgccagcagcatggcctcccg
aatgccaccgccctgcgcaccttcaggagctgcgcggctgcctgtcactcggcgctggtg
gagtctctgggagaggagctgaagtatgagaaggacaactatgcacagccagaggagctt
gcagcgggtccgcctgcgggcttctcgctgaccgagaccgatggcgacactctgatgagc
ttgagcaaggagcacaagggagagcgggtgaccattgatgtgatggtgaacgaccagccc
gaggaggagctggtggaggaccagagtggggcgctggatgctgacgtgggcgccgtcttc
accgcctcggtcaccaagggagaccagagcctagtgtttgagtgcaagagcgacggccag
tacttttcggtgctgcacgtcagcctggagcccgccggcggcgaggaggaggagtcggcg
tacagcgggccggtttatgaggagctggatgaaaagctgcaggcccaccttgagcactac
ctggcagagcgcggcgtgaatgaggagctgggcgcctacctgctgccgctcatccacgac
aaagagcagcgggagtacgtgaggtggctggcacgtgtgcaggcgtttgtgaatgcatga
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integrated database retrieval system
