KEGG   Chlorella variabilis: CHLNCDRAFT_138954
Entry
CHLNCDRAFT_138954 CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
cvr  Chlorella variabilis
Pathway
cvr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CHLNCDRAFT_138954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cvr03021]
    CHLNCDRAFT_138954
   03019 Messenger RNA biogenesis [BR:cvr03019]
    CHLNCDRAFT_138954
Transcription machinery [BR:cvr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     CHLNCDRAFT_138954
Messenger RNA biogenesis [BR:cvr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CHLNCDRAFT_138954
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_RBM22 zf-CCCH_2 Nab2-like_zf-CCCH_ zf-CCCH_3 zf-CCCH_UNK zf-CCCH_4 zf-CCCH_DUS3L zf-CCCH_tandem
Other DBs
NCBI-GeneID: 17351970
NCBI-ProteinID: XP_005844535
JGI: ChlNC64A_1_138954
UniProt: E1ZP09
LinkDB
Position
Unknown
AA seq 233 aa
MDDFTFDFERGLESQPAQRGYQAADDGMGGRGNAEPKPRNYRQTVCTYWLRGLCMKGDTC
GFLHQFDPERMPVCRSLLKFGVCKEPDCPYKHTLEAIKECNMYKLGFCIYGPACRFKHTR
QLAPPPDPETLEAAKPREHRNLNIVANQANENIMPEREARGPRRPRPGGDGGGYMALPGA
GGGGGAGPSAVQQYAGPGGARQPGQQYGGQQAPGYADSALLAAVGQADLRYGF
NT seq 702 nt   +upstreamnt  +downstreamnt
atggacgacttcacgttcgactttgagcgcggcctggagtctcagccggcgcagaggggc
taccaggcagccgacgatggcatgggcgggcggggcaacgcggagcccaagcctcgcaac
taccgccagaccgtgtgcacctactggctgcgtgggctgtgcatgaagggcgacacgtgc
ggtttcctgcaccagttcgacccggagcgcatgcccgtctgccgcagcctgctcaagttt
ggcgtatgcaaggagccggactgcccctacaagcacaccctggaggcgatcaaggagtgc
aacatgtacaagctggggttctgcatctacgggcccgcgtgccggttcaagcacacgcgg
cagctggcgccgccgcccgacccagagacgctggaggcggccaagccgcgggagcatcgc
aacctcaacatagtagccaaccaggccaacgaaaacatcatgccggagcgggaggcgcgc
ggcccgcggcggccgcggcccggcggcgacggcggcggctacatggcgctgcccggcgcg
ggcggcggcggcggcgcggggccctccgcagtgcagcagtacgcggggccgggcggcgcg
cggcagccggggcagcagtacggcgggcagcaggcgccggggtatgcagactcggcgctg
ctggcggcggtcgggcaggcggatctgcggtacggcttctga

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