Chlorella variabilis: CHLNCDRAFT_139551
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Entry
CHLNCDRAFT_139551 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_139551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_139551
03012 Translation factors [BR:
cvr03012
]
CHLNCDRAFT_139551
Enzymes [BR:
cvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLNCDRAFT_139551
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CHLNCDRAFT_139551
Translation factors [BR:
cvr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
CHLNCDRAFT_139551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
R3H
DEAD
Ank_2
Ank
Ank_3
ATPase
nSTAND3
Ank_4
AAA_19
AAA_22
AAA_23
Sigma54_activat
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
17351353
NCBI-ProteinID:
XP_005844111
JGI:
ChlNC64A_1_139551
UniProt:
E1ZQE2
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MSGRGGPGDGRGGGRGRGRLRPGLRPVAENTRLSITEQLELFQRSDATGELPGSASGRQQ
AGTEYAFPPGLSNHDRAVVHAECKKYGFTSKSHGKNESRCVCVYKRQQRRGGDPAFELPL
GPQSLAALEAYFHAHPPSQAELAGIAGQGRDVDLQDSYGTGEAGSSSEDEAEEEAAAEGD
AVEAAAAGAQAGADGQQQQQQAEAGGRKKGRGGGGAKQHAAAFSEAESLIAGREALPIAS
FREQIVSALDSSQVVLIAGETGCGKTTQVPQYILEDAWYRGKGCRVVCTQPRRISAVSVA
ERVAAERGEGVGDNVGYTIRLESRGGPASSLMFCTNGVLLRMLTAGARGGGGGGGGPARD
PLASVTHLVVDEIHERDRFADFLLILVRDLLPAHPHLRVVLMSATLHIDLFSGYFGGCPV
VRVPGFTHPVEDFYLESILALTGYQEAAVRQVGGLTGGTGASRATAPPPASLPAKERRRI
EEAIEAAFTTGTDEAFEALLEVTGAAGADDMSQGAPGVNVKHTAKGATALMAAAVHGRAD
VVSALLSNGADPSVALPGAGAQTARDLAALYGHGAVVEVLDEFGEGAAAAEELANAALAL
SHYQAQTNADEVDVDLIHLLLMYACQEGVFKKTDAEAAAAAAAGPQVLGAVLVFLPGWDE
IMRLKEKLESSPAFGSSRYQLLPLHSMVAPAEQRRVFVRPPAGVRKIVLATNIAPVVAPH
HTTPQPCLTPP
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcagaggcggacctggggatggcaggggaggtggcaggggccgcggcaggctg
cgcccaggcctgcgcccagttgcagagaacacccggctgtctattaccgagcagctggag
ctgttccagcgctcggacgccacaggcgagttgccagggagcgcctcagggcgccagcag
gccggcaccgagtatgccttcccgccaggcctgtccaaccacgatcgtgcggtggtgcac
gccgaatgcaagaagtacggcttcaccagcaaatcgcacggcaagaacgagtcgcgctgc
gtgtgcgtgtacaagcggcagcagcggcgcggcggcgacccggcgtttgagctgccgctg
gggccgcagtcgcttgcggccctggaagcctacttccacgcgcacccgccctcgcaggcg
gagctggccggcattgcggggcaggggcgggacgtggatctgcaggattcgtacggcaca
ggggaggccggcagcagcagcgaggatgaggcggaggaggaggcggcggcagagggcgac
gcagtagaagcagcggcagctggtgctcaggcaggcgccgacggccagcagcagcagcag
caggcggaggcaggcgggcgcaagaaggggcgcggcggcggcggcgccaagcagcacgcc
gcggcgtttagtgaggcggagagcctgatcgcggggcgtgaggcgctacccatcgcctcc
ttccgcgaacagattgtgtcggcgctggacagcagccaggtggtgctgattgcgggggag
acggggtgcggcaagaccacgcaggtaccacagtacatcctggaggatgcgtggtaccgc
ggcaagggctgccgcgtggtgtgcacccagccccgccgcatctcagccgtatcggtggct
gagcgcgtggcggcggagcgcggcgagggcgtgggcgacaacgtgggctacaccatccgc
ctggagtcgcgcggcggccccgcctcctccctcatgttctgcaccaacggcgtcctgctg
cgcatgctgaccgcgggcgcgcgtggcggcggcggcggcggcggcggtcccgcgcgggac
cccctggcctccgtcactcacctggtggtggacgagatccacgagcgggaccgcttcgcc
gacttcctgctcatcctggtgcgcgacctgctgcccgcgcacccccacctgcgcgtggtg
ctcatgtccgccaccctgcacatcgacctgttctctggctactttggggggtgcccggtg
gtgcgcgtgcctgggttcacacacccagtggaggacttttatctggagagtatcctggcg
ctgacgggataccaggaggcggcggtacggcaggtgggcggcctgacgggcggcaccggc
gccagccgcgccaccgcgccgccgccggccagcctgcccgccaaggagcggcggcggatc
gaggaggcgatcgaggcggccttcacgacaggcacagacgaggcgtttgaggctctgctg
gaggtgacaggggcggctggcgcggacgacatgtcgcagggggcgcccggcgtcaatgtg
aagcacacggccaagggcgccaccgcgctcatggcggccgcggtgcacggccgcgccgac
gtcgtgtctgccctgctgtcaaacggggccgacccctcggtggcgctgcccggcgccggt
gcccagacggcgcgcgacctggctgcgctgtacgggcacggcgcggtggtggaggtgctg
gatgagtttggggagggggcggcagccgccgaggagctggccaacgcggcgctggcgctg
agccactaccaggcgcagaccaatgcggatgaggtggatgtggacctcatccacctcctt
ctcatgtacgcctgccaggagggcgtgttcaagaagacggatgcagaggcggctgctgcc
gcggcggcggggccgcaggtgctgggcgcggtgcttgtgttcctgcccggctgggacgag
atcatgcggctcaaggagaagctggagagcagccccgcctttgggagcagcaggtaccag
ctgctgccgctgcactccatggtggcccccgcggagcagcgccgcgtgtttgtgcggccg
cccgccggcgtgcgcaagattgtgctggcaaccaacatagcaccagtcgtggcgccacac
cacaccacaccacaaccctgcctcacgcccccttaa
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integrated database retrieval system
