Chlorella variabilis: CHLNCDRAFT_141429
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Entry
CHLNCDRAFT_141429 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_141429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_141429
03041 Spliceosome [BR:
cvr03041
]
CHLNCDRAFT_141429
03009 Ribosome biogenesis [BR:
cvr03009
]
CHLNCDRAFT_141429
03016 Transfer RNA biogenesis [BR:
cvr03016
]
CHLNCDRAFT_141429
Enzymes [BR:
cvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLNCDRAFT_141429
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CHLNCDRAFT_141429
Spliceosome [BR:
cvr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHLNCDRAFT_141429
Complex C
U4/U6.U5 tri-SnRNP related factors
CHLNCDRAFT_141429
Ribosome biogenesis [BR:
cvr03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHLNCDRAFT_141429
Transfer RNA biogenesis [BR:
cvr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CHLNCDRAFT_141429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
17350537
NCBI-ProteinID:
XP_005843202
JGI:
ChlNC64A_1_141429
UniProt:
E1ZSU9
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MATAMAAEPPPKRARLASDRVAPMPSGANLIEVDGKSCTHEVAWPPGEEGSLLPPPPRAG
PPAREYPFPLDPFQQTAVNALEAGHSVLVAAHTSAGKTVVAEYAFGMALRDGHKVVYTSP
LKALSNQKYRELQEQFGDVGLMTGDVTINPNASCLVMTTEILRSMMYRGTELVRQLALIV
YDEIHYLRDKERGVVWEESIILAPKTARFAFLSATIPNSREFADWVAKTHGSPCHVVYTD
YRPTPLEHYIFPAGGDGLFLVVDNKGTFREDNFQKAVAQLQEAEVKAKRPAGGGGGKGKK
GGVQEAGAPKEESDIFKIVRMIAERRFDPVIVFSFSKKECEALAKQMQGLDLNEEAEKKL
VDGIFSSAIDVLSDADRRLPQIAGALPMLRRGVGVHHSGLLPILKEVVEILFQEGLLKVL
FATETFSTGLNMPAKTVVFTHVRKFDGGGFRWVRSGEYIQMSGRAGRRGLDDKGVAILMM
DEKLEPAVAKDMIKGAPDTLHSEFHLEYSMLLNLLRVEGVEPEELMARSYRQFQMERALP
QLEARVRRLEAERDGLVIEQEESVKEYLALSQQLAKLRAETRAIVAAPQHCLPFLQPGRL
VRVLPPEQPPAAVSQPRQEAPGSAAPATAKGANGSGGSGEGVVGVVVNFELAWKQQVGQE
VGGAGTSAGGKRGTRQYIVDVLCNCSEESLRHQGASRRRAVPVPPGAKGSPAVIPVALPE
LAAFSSLRIYIPQDLRTQASPHRRQQPANLPAVLSLPMLPEARERCAKSLAEVERRFPKG
LPQLDPAEDMRIEDEGLRKLLRKAESVEGLLAKHPLAASPSLQQQLDTLLQKQALHEAVR
TAKKECKAAAALICHEDLKARKRVLSRLDYLDRSGVVTLKGRFAAELSTGDELVLTEMVF
AGVFQDMSLEQLCALISCFIWREKSETGNKVRPDLEAPYGSLRAAARKVARAAADCKMEM
DVEEYVDSFRPDMMESVAGWCQGLSFAELLKRTEVFEGSLVRAIRRLEELLRQVAGVLKA
VGEAGLGERFEAAIARIKRDIVFAASLYL
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccatggccgctgagccgcccccaaagcgggcccggctggccagcgaccgc
gtggcgcccatgcccagcggtgccaatttgatagaggtcgacggcaagagctgcacgcac
gaagtggcatggccgccaggcgaggagggctcgctgctgccgccgccgccgcgggcgggc
ccgccggcgcgcgagtacccgttcccgctcgatcctttccagcagacggcggtcaacgcc
ctggaggcggggcacagcgtgctggtggcggcccacacctcagctggcaagacggtagtg
gcggagtatgcgtttggcatggcgctgagggatgggcacaaggtcgtgtacacctcgccg
ctcaaggcgctttccaaccagaagtaccgcgagctgcaggagcagtttggggacgtgggg
ctgatgacgggcgacgtgaccatcaaccccaacgcctcgtgcctggtcatgacgacagag
atcctgcggtccatgatgtaccgcggcaccgagttggtgcgccagctggcgctgatcgtg
tacgacgagatacactacctgcgggacaaggagcgtggcgtggtgtgggaggagtcgatc
atcctggcccccaagaccgcccgcttcgccttcctgtccgccaccatccctaactcccgc
gagtttgccgactgggtggccaagacgcacggcagcccctgccacgtcgtgtacacagac
taccgccccacgcccctggagcattacatcttcccagccggaggcgatgggctgttcttg
gtggtagacaacaagggcaccttcagggaggacaacttccaaaaggcggtggcgcagctg
caagaggcggaagtgaaggcgaagcggccggcgggcggcggcggcggcaagggcaagaag
ggcggggtgcaggaggcgggggcccccaaggaggaaagcgacatcttcaagattgtgcgc
atgattgccgagcgccgcttcgacccagtcatcgtgttttccttcagcaagaaggagtgc
gaggcgctggccaagcagatgcaaggcctggacctgaacgaggaagccgagaagaagctg
gtggacggcatcttcagcagcgccatagacgtcctgtccgacgcggaccggcggctgccc
cagatcgcgggcgcgctgcccatgctgcggcgcggcgtgggggtgcaccactcgggtctg
ctgcccatcctcaaggaagtggtggagattctgttccaggaggggctgctcaaggtgctg
tttgccaccgagaccttctctaccggcctcaacatgcccgccaagacggtcgtcttcact
cacgtgcgcaagttcgacggcggcggcttccgctgggtgcgcagcggagagtacatccag
atgagcgggcgggccgggcggcgcgggctagacgacaaaggcgtggccatcctgatgatg
gatgagaagctggagccggcggtggccaaggacatgatcaagggcgctcccgacacgctc
cactctgagttccatctcgagtattccatgctgctcaacctgctgagggtggagggtgtg
gagcccgaggagctgatggcccgctcctaccgccagttccaaatggaaagggccctgccg
cagctggaggcgcgcgtgcggcggctcgaggcggagcgtgatgggctggtgattgagcag
gaggaaagtgtgaaggagtatctggcgctcagccagcagctggccaagctgagggcagag
acgcgggccatagtggctgcgccgcagcactgcctgcccttcctgcagccgggccgcctg
gtgcgcgtgctgccgcctgagcagccgccagcggcggtgtcgcagccacggcaggaggca
ccaggctccgcggcgccggcaacagcgaagggagcgaacggcagcggcggcagcggcgag
ggtgtggtgggtgtggtggtgaattttgagctggcgtggaagcagcaggtgggccaggag
gtgggcggcgccggtaccagtgctggaggaaagcgcggtaccaggcagtacatcgtcgat
gtgctgtgcaactgctcagaggagtcgctgcgccatcagggcgccagccgacggcgagca
gtgcctgtgccgccaggcgccaagggctcccccgccgtgatcccggtggcgctgcccgag
ctggccgcctttagcagcctgcgcatctacatcccgcaagacctgcgcacacaggcgagt
ccacaccggcggcagcagccagccaaccttcctgccgtcctgtcactgccaatgcttccc
gaggcgcgcgagcggtgcgccaagtcgctggcagaggtggagcggcgcttcccaaagggg
ctgccgcagctggacccagcagaggacatgcggatagaggacgagggcctgcgcaagttg
ctgcgcaaggctgagagcgtggaggggctgctggccaagcacccgctggccgcatccccc
agcctgcagcagcagctcgacacgctgctgcagaaacaggctctgcacgaggctgtacgt
accgccaagaaggaatgcaaggccgccgcggccctgatttgccacgaggacttgaaggcc
cgcaagcgggtgctcagccggctggattacctggacaggagcggtgtggtgacgctcaag
ggccgctttgctgcagagctgagcacgggggatgagctggttctgacggagatggtgttt
gcgggggtgttccaggacatgagcctggagcagctgtgcgctctcatctcatgcttcatc
tggcgggagaagagcgagaccggcaacaaggtgcgccccgacctggaggctccgtacggc
tcgctgcgcgcggctgcgcgcaaggttgcccgggcggcggccgactgcaagatggagatg
gatgttgaggagtacgtggacagcttccggccagacatgatggagtcggtggctggctgg
tgccagggcctgtcctttgcagagctgctcaagcgtaccgaagtgtttgagggctcgctg
gtgcgcgccatccggcgcctggaggagctgctgcgccaggtggcgggcgtgctcaaggcg
gtgggggaggcggggctgggggagcggtttgaggcagccatcgcgcggatcaagcgggac
atagtgtttgccgcctccctctacctgtga
DBGET
integrated database retrieval system
