Chlorella variabilis: CHLNCDRAFT_142438
Help
Entry
CHLNCDRAFT_142438 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cvr
Chlorella variabilis
Pathway
cvr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHLNCDRAFT_142438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cvr03021
]
CHLNCDRAFT_142438
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_142438
Transcription machinery [BR:
cvr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CHLNCDRAFT_142438
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CHLNCDRAFT_142438
U7-dependent histone pre-mRNA processing factors
CHLNCDRAFT_142438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Peptidase_M7
Motif
Other DBs
NCBI-GeneID:
17357515
NCBI-ProteinID:
XP_005850465
JGI:
ChlNC64A_1_142438
UniProt:
E1Z749
LinkDB
All DBs
Position
Unknown
AA seq
709 aa
AA seq
DB search
MAPAASTLPQKRKSDADGTPDDSVVQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGF
FGIASLPFFDEVDLSEVDAMLVTHFHLDHCAAVPYVTGHTSFRGRVLMTHPTKAIVHTLL
KDFVKVSKGGSGEGLYSERDLDAAMERTEVIDFHQTVDLDGIRVTAYRAGHVLGAAMFMV
EVGGMRLLYTGDYSRIPDRHMPAADLPAQRPHIVVVESTYGVSRHLPREEREQRFVQRIH
TAVARGGRVLLPVVALGRAQELLLILEEYWERHPELHGVPIYQASGLARRAISVYKAYIE
MMNEDIKRAFTVANPFEFKHISHLKSAAHFDDSGMSRELFEAWCEDARNCVVIADFAVQG
TLARDILGNPSEVMTRNGVKVPLRMQVDAISFSAHADFPQTSEFLDALQPPHVVLVHGEA
TEMGRLKKALEQHAAALNIPRALYMPKVTQPVLIEHRTERTAKAVGRLGEKAPAQGAAVR
GLLVQSRGGARTLMHHDDLPRFTKLHPGRVVQRQAMPLHRPFSEVRLALEMMFEGTQGAG
DLGRVDAAGGSPTKGGQILRIGDAVTLTYQPVEAASGASSGHAILEWCGGSDADMVADAV
VAVVLQAAGQPPGLPAIEVQRHQALKAGDLEAVAAAELGIITALLNAQFGPARLDADQGL
VFVEVNGQHVVINPKSGKVQCADAELRGRVERALERMHMALQPCDVSDI
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggcgccagcggcctccacactcccgcagaaacgcaagtccgacgcggatgggacgcca
gatgacagtgtagtgcagattctgccgctgggcgcggggcaggaggtggggcgctcctgc
atcatcgtgcgctattgcggcaagacggtgatgctggactgcggagtgcaccccggcttc
ttcgggatcgcctcgctgcccttctttgacgaggtggacctgtccgaggtggacgccatg
ctggtcacacacttccacctggaccactgcgctgcggtgccctacgtcaccggccacacc
agcttccggggccgcgtgctcatgacgcaccccaccaaggccatcgtgcacacgctgctc
aaggactttgtcaaagtcagcaagggaggctcaggcgagggcctgtacagcgagcgcgac
ctggacgccgccatggagcgcaccgaggtcatcgacttccaccagactgtggacctggat
ggcatccgcgtcaccgcgtaccgagcggggcacgtgctgggcgccgccatgttcatggtg
gaggttggcggcatgcggctgctgtacacgggcgactactcgcgcatccctgaccgccac
atgcccgccgccgacctgcccgcccagcgcccgcacattgtggtggtggagagcacgtat
ggcgtgtcgcgccacctgccgcgcgaggagcgcgagcagcgctttgtgcagcgcatacac
accgcggtggcacgcggagggcgcgtgctgctgccggtcgtggcgctggggcgggcccag
gagctgctgctcatcctggaggagtactgggagcggcacccggagctgcatggggtgccc
atctaccaggctagcggtctggcgcgtcgcgccatcagcgtgtacaaggcgtacatcgag
atgatgaacgaggacatcaagcgcgccttcaccgtggccaacccctttgagttcaagcac
atctcccacctcaagtcagcggcgcactttgatgatagcggcatgtcccgggagctcttt
gaggcatggtgcgaggacgctcgcaactgtgtggtgattgccgactttgcggtacagggc
acgctggctcgcgacattctgggcaacccgtcagaagtgatgacgcgcaatggagtcaag
gtgcctctgcgcatgcaagtggatgctatctccttctccgctcatgccgacttccctcag
accagcgagttcctggatgcgctgcagccgccgcacgtggtgctggtgcatggcgaggcc
acagagatggggcggctgaagaaggcgctggagcagcacgcggcggcactcaacatccca
cgcgccctctacatgcctaaggtcacgcagccggtgctgattgagcaccgcacggagcgc
acggccaaggcggtggggcggctgggagagaaggcgccagcgcagggcgcggcggtgcgc
ggcctgctggtgcagtctcgcggcggcgcacgcacgctcatgcaccacgatgacctgccc
cgcttcaccaagctgcacccagggcgcgtggtgcagcggcaggctatgcccctgcaccgc
cccttctcagaggtgcggctggcgctagagatgatgtttgaaggcacgcagggtgcggga
gacctggggcgcgtggatgctgctggagggtcaccgaccaagggcggccagattctgcgc
atcggcgacgcagtcacgctgacctaccagccagtcgaggcggccagcggcgccagcagc
ggccacgcaatcttggagtggtgcggtggcagcgatgccgacatggtggcggatgctgtg
gtagctgtggtgctgcaggcggcgggccagccgcccggcctgcccgctatcgaggtgcag
cggcaccaggcgctcaaggctggggacctggaggcggtggccgccgccgagttgggcatc
atcacagccctgctgaacgcgcagtttgggccggcgcggttggatgcagatcagggcctg
gtgtttgtggaggtgaatgggcagcacgtggtgatcaaccccaagagcggcaaggtgcag
tgcgcagacgcagagctgcgggggcgcgtggagcgggcgctggagcgcatgcacatggcg
ctgcagccctgcgacgtcagcgacatctag
DBGET
integrated database retrieval system
