Chlorella variabilis: CHLNCDRAFT_28067
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Entry
CHLNCDRAFT_28067 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_28067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_28067
03041 Spliceosome [BR:
cvr03041
]
CHLNCDRAFT_28067
03009 Ribosome biogenesis [BR:
cvr03009
]
CHLNCDRAFT_28067
03016 Transfer RNA biogenesis [BR:
cvr03016
]
CHLNCDRAFT_28067
Enzymes [BR:
cvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLNCDRAFT_28067
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CHLNCDRAFT_28067
Spliceosome [BR:
cvr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CHLNCDRAFT_28067
Complex C
U4/U6.U5 tri-SnRNP related factors
CHLNCDRAFT_28067
Ribosome biogenesis [BR:
cvr03009
]
Eukaryotic type
Pre-60S particles
Helicases
CHLNCDRAFT_28067
Transfer RNA biogenesis [BR:
cvr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CHLNCDRAFT_28067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HTH_11
HTH_DeoR
adh_short_C2
AAA_22
FlxA
nSTAND3
GntR
Motif
Other DBs
NCBI-GeneID:
17350840
NCBI-ProteinID:
XP_005843525
JGI:
ChlNC64A_1_28067
UniProt:
E1ZS03
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
EHTPAPPSTAGTIEAPRWGGPLAKQYPFVLDPFQTAAIACIERRESVLVAAHTSAGKTVV
AEYAIAKAFAQDGQRVVYTSPLKALSNQKYRELAEEFGDVGLMTGDVTLNPTARCIVMTT
EILRSMIYRASEFLRDIAWVVFDEVHYMQDRERGVVWEETMIFMPKTSRMVFLSATLPNA
FEFAQWVSYLHTQPCHVVYTGAPDYRPTPLLHYAFPSGGKGLYLLVDERGNFRDENFAKL
RRVGAAGRRLHRRKSGGRGFGGEGKDGKQQGPSTSEDLQKLVKLIKDRSYEPAIVFSFSR
RECELYANDLFKKAKEEKDAVAEVFNSAIQCLKEEDRSLPFITAMLAMLQAGIGVHHSGL
LPILKELVEILFGEQLIKCLFSTETFAMGLNMPARTCVFTALRKWDGEENRWIGSGEYIQ
MSGRAGRRGKDDRGLVFLMVDGALDEPTAKSMMQGKASPLLSSFKLSYYTVLNLMRRLED
TEYDMEYVIGKSFSQFQHERQLPQLESRLKAIESESTAITAATDAAAEEYSAGKQDLEEQ
LAVVRAAMQQPQHCVHFLRPGRIVRVTEGARQWGFGVVVSAFRKQPQERQGVSEAAAAAY
VVDTLLCCAAPSGANGGSNGGGGEPTPADLAAENAEMQVIPVPLPLITEICTLRISIPGD
LRPAESRKAVLLTLRELSLKYAGGQLPLLDPVADMGVQDGKVAAALDAAAAIRRRLAGNP
LWQQGGGDPSQIEALRRKSELSQEAAGIKRRMRESQLSSFKLESRQRSAVLRKLGFIDAG
GMVQPKGRVACEIDAADELLTAELLVNGTFGGLDKHQLVALVSCLVPVDRTNEKVKLSAQ
MAAPLGQLQAVARHIAEVSNECGLEVDADEYVESFRPSLMDVIYGWSKGASFGEVCGMTD
IFEGSIIRATRRLDELMQQLEAAAAVVGEKELAAKFGASRDTIRRDIIFAASLYI
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
gaacacacccctgccccgccctccactgcaggcacaatcgaggcgccgagatggggtggc
ccactggccaagcagtaccctttcgtactggaccccttccagacagccgccatcgcatgc
atcgagcgtcgcgagtcggtgctggtggccgcccacacctcggccggaaagacggtggtt
gccgaatacgcgattgccaaggcgtttgcgcaggacgggcagcgcgtggtgtacacctcc
cctctcaaggccttgtccaaccaaaagtaccgggagctggcggaggagtttggggacgtg
ggcctgatgacgggcgacgtgaccctgaaccccaccgcgcgctgcatcgtcatgaccacc
gaaatcctgcgctcgatgatctaccgcgcctcagagttcctcagggacattgcgtgggtg
gtgtttgacgaggtgcactacatgcaggaccgggagcggggcgtggtgtgggaggaaacg
atgatcttcatgcccaagacaagccgcatggtgttcctgagcgccaccctgcccaacgcc
tttgagtttgcccagtgggtgtcctacctccacacccagccctgccacgtcgtctacaca
ggcgcgccggactaccgccccaccccgctgctgcactatgctttcccttccggcggcaag
ggcctgtacctgttggtggatgagcggggcaacttccgagacgaaaatttcgccaagctg
cggcgggtgggtgctgccgggcggcgcctgcaccgccgcaagtcgggcgggcgcggcttc
ggtggggaaggaaaggacggcaagcagcagggccccagcaccagcgaggacctgcagaag
cttgtcaaactcataaaggacaggagctatgagccggccatcgtgttcagcttcagccgc
agggagtgcgagctgtacgccaacgatctcttcaagaaggccaaggaggagaaggatgct
gtggccgaggtgttcaattctgcgatccagtgcctcaaggaggaggaccgctccctgccc
ttcatcacagccatgctggccatgctgcaggcgggcatcggcgtgcaccacagcggcctg
ctgcctatcctcaaagagcttgtggagatcctttttggggagcagctgatcaagtgcctg
ttcagcaccgagaccttcgccatgggcctcaacatgcccgccaggacctgcgtcttcacc
gctctgcgcaagtgggacggcgaggagaacaggtggataggcagcggcgagtacatccag
atgagcgggcgggcagggcggcgcggcaaggacgacagggggctggtgttcctgatggtg
gacggcgccctggacgagcccactgccaagtccatgatgcagggcaaggccagcccgctg
ctttccagcttcaagctttcgtactataccgtgctcaatctgatgcggcgcctggaggac
acggagtacgacatggagtatgttatcggcaagtcgttcagccagttccagcacgagagg
cagctgccgcagctcgagagccggctcaaggcgattgagagcgaatcgacggccatcaca
gcagccaccgacgcggcggcagaggagtacagcgccggcaagcaggacctggaggagcag
ctggcggtggtgcgggcggccatgcagcagccgcagcactgcgtgcactttttgcgcccg
gggcgcatcgtgcgggtgacggaaggcgcgcggcagtggggctttggcgtggtggtctcc
gccttccgcaagcagccgcaggagcggcagggggtatccgaggcggcggcggcggcatac
gtggttgacaccctgctgtgctgcgccgctccctctggtgcaaacggcggcagcaacggc
ggcggcggtgagcccacgccggcggacctggcggcagagaatgcggagatgcaggtaatc
cccgtgcccctgcccctcatcaccgagatctgcacactgcgcatctccataccgggagac
ctgcggcctgcagagtcgcgcaaagcggtgctgctgacgctgcgggagctgtccctgaag
tatgctggggggcagctgccgctgctggacccggtagcagacatgggggtgcaggacggc
aaggtggctgccgcgctggatgcggcggcggcgatacggcggcggctggccggcaacccg
ctgtggcagcagggcggcggcgacccctcgcagatagaggccctgcggcgcaagtcggag
ctgagccaggaggcggcgggcatcaagcggcgcatgcgggagagccagctcagcagcttc
aagctggagagccgccagcgcagcgccgtgctgcgcaagctgggcttcattgatgccggg
ggcatggtgcagcccaaggggcgggtagcctgcgagatcgatgccgcggacgagctgctg
accgccgagctgctggtcaacggcacctttggcgggctggacaagcaccagctggtggcc
ctggtctcctgcctggtccccgttgaccgcaccaacgagaaggtgaagctgtcggcgcag
atggcggcgccgctgggccagctgcaggcggtggcgcgccacatcgccgaggtttctaac
gagtgtgggctggaggtggatgcagatgagtatgtggagagcttccggccgagcctgatg
gatgtgatttatggatggagcaagggggcttcgtttggggaggtgtgcggcatgaccgac
atcttcgagggcagcatcatcagggcaactcggcgcctggacgagctgatgcagcagctg
gaggctgcggcggcggtggtgggggagaaggagctggcggccaagtttggggccagccgg
gacacgatccggcgggacatcatctttgccgcctcgctgtacatctga
DBGET
integrated database retrieval system
