KEGG   Chlorella variabilis: CHLNCDRAFT_29172
Entry
CHLNCDRAFT_29172  CDS       T02924                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
cvr  Chlorella variabilis
Pathway
cvr03013  Nucleocytoplasmic transport
cvr03015  mRNA surveillance pathway
cvr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cvr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CHLNCDRAFT_29172
  09122 Translation
   03013 Nucleocytoplasmic transport
    CHLNCDRAFT_29172
   03015 mRNA surveillance pathway
    CHLNCDRAFT_29172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cvr03019]
    CHLNCDRAFT_29172
   03041 Spliceosome [BR:cvr03041]
    CHLNCDRAFT_29172
   03009 Ribosome biogenesis [BR:cvr03009]
    CHLNCDRAFT_29172
   03012 Translation factors [BR:cvr03012]
    CHLNCDRAFT_29172
Enzymes [BR:cvr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CHLNCDRAFT_29172
Messenger RNA biogenesis [BR:cvr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CHLNCDRAFT_29172
   mRNA cycle factors
    Stress granule specific factors
     CHLNCDRAFT_29172
Spliceosome [BR:cvr03041]
 Complex C
  Other components
   EJC/TREX
    CHLNCDRAFT_29172
Ribosome biogenesis [BR:cvr03009]
 Eukaryotic type
  90S particles
   Helicases
    CHLNCDRAFT_29172
Translation factors [BR:cvr03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    CHLNCDRAFT_29172
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_22 CMS1 AAA AAA_30 Helicase_RecD CbiA UvrD-helicase
Other DBs
NCBI-GeneID: 17359420
NCBI-ProteinID: XP_005851716
JGI: ChlNC64A_1_29172
UniProt: E1Z284
LinkDB
Position
Unknown
AA seq 402 aa
MADGGRKTNIAEGDVDMEFETSKGVKVVSSFDAMGLREQLLRGIYQFGFEKPSAIQQRAV
LPITQGRDVIAQAQSGTGKTSLIAITLCQMLDTTLREVQALVLSPTRELATQTEKNILAI
GDHMAVQAHACIGGKSVGDDIRKLENGVHIVSGTPGRVFDMIKRRSLRTRNIKTLVLDEA
DEMLNKGFKEQIYDIYRYLPPETQVVLVSATLPHEVLEMTHKFMTDPVRILVKRDELTLE
GIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRQNNFTVSAMHG
DMPQKEREAIMDEFRKGATRVLITTDVWARGLDVQQVSLVINYDLPNSRELYIHRIGRSG
RFGRKGVAINFVKNDDIKILRDIEQFYSTQIDEMPMNVADLI
NT seq 1209 nt   +upstreamnt  +downstreamnt
atggcggacggcggcaggaagaccaacatcgccgagggcgatgtggacatggagtttgag
accagcaagggcgtcaaggtggtcagcagctttgacgccatgggcctgcgggagcagctg
ctgcgcggcatctaccagtttggcttcgagaagccctcggccatccagcagcgcgcggtg
ctgcccatcacccagggccgcgacgtcatcgcgcaggcgcagtcgggcacgggcaagacc
tcgctcatcgccatcacgctgtgccagatgctggacaccacgctgcgggaggtccaggcg
ctagtgctgtcgcccactcgcgagctggcgacgcaaacagagaagaatatcctggcaata
ggcgaccacatggcggtgcaggcgcacgcgtgcatcggcggcaagtctgtgggcgacgac
atccgcaagctggagaacggcgtgcacattgtgagcggcacccccggccgcgtgttcgac
atgatcaagcggcgcagcctgaggaccaggaacatcaagacgctggtgctggatgaggct
gacgagatgctgaacaaggggttcaaggagcagatctacgacatctaccgctacctgccg
cccgagacgcaggtggtgcttgtgtctgccacgctgccccacgaggtgctggagatgacc
cacaagttcatgaccgacccggtgcgcatcctggtcaagcgcgatgagctgacgctggag
ggcatcaagcagttctttgtggcggtggagcgcgaggagtggaagtttgacacgctgtgc
gacctgtacgacacgctcaccatcacccaggcagtcatcttctgcaacaccaagcgcaag
gtggactggctgacggagaagatgcggcagaacaacttcaccgtgtcggccatgcacggc
gacatgccccagaaggagcgggaggcgatcatggatgagttccgcaagggcgccacccgc
gtgctcatcaccacagacgtgtgggctcgcggcctggacgtgcagcaggtgtcgctggtc
atcaactacgacctccccaactcccgcgagctctacatccaccgcatcggccgttcgggt
cgctttggccgcaagggtgtggccatcaactttgtgaagaacgacgacatcaagatcctg
cgcgacattgagcagttctactccacgcagatagatgagatgcccatgaacgttgccgac
ctgatttaa

DBGET integrated database retrieval system