Chlorella variabilis: CHLNCDRAFT_33628
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Entry
CHLNCDRAFT_33628 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cvr
Chlorella variabilis
Pathway
cvr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CHLNCDRAFT_33628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvr03041
]
CHLNCDRAFT_33628
03009 Ribosome biogenesis [BR:
cvr03009
]
CHLNCDRAFT_33628
Enzymes [BR:
cvr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CHLNCDRAFT_33628
Spliceosome [BR:
cvr03041
]
Complex A
U2 snRNP components
U2 related factors
CHLNCDRAFT_33628
Complex B
CHLNCDRAFT_33628
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CHLNCDRAFT_33628
Ribosome biogenesis [BR:
cvr03009
]
Eukaryotic type
90S particles
Helicases
CHLNCDRAFT_33628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
HA2_N
Helicase_C
AAA_22
AAA_19
ResIII
Flavi_DEAD
SRP54
AAA
AAA_30
nSTAND3
IstB_IS21
AAA_16
Helicase_RecD
ABC_tran
TsaE
TrwB_AAD_bind
AAA_7
T2SSE
AAA_24
NACHT
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
17359311
NCBI-ProteinID:
XP_005852221
JGI:
ChlNC64A_1_33628
UniProt:
E1Z365
LinkDB
All DBs
Position
Unknown
AA seq
716 aa
AA seq
DB search
MERKRKLEVYDGVPQANGGGGAYQNTAAPPAGDPHANINPYTGRSYSARYHQILSTRQGL
PVWQAKADFINMVNSSQTIILVGETGSGKTTQIAQFIAEAGYCAGGKKVVCTQPRRVAAM
SVARRVAEEMDVALGEEVGYSIRFEECSGPRTIIKFATDGMLLREAMTDPLLEKYSVIIL
DEAHERTLATDVLFGLLKEVLKQRQDLKLVVMSATLEAEKFQGYFLDAPLIKVPGRLHPV
EIFYTQEPERDYLEAAIRTVVQIHSCEGPGDILVFLTGEEEIEDACRKITKEVNNLGDSV
GPIKVYPLYSTLPPQQQQRIFDPAPPAARPGGPAGRKIIVSTNIAETSLTIDGIVFVIDP
GFAKQKVYNPRIRVESLLVSPISRASAHQRAGRAGRTKPGKCFRLYTEASFYKDLQEQTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLGALDDEGNLTQVG
TVMAEFPLDPQLSKMIVAAPEFKCSNEILSIAAMLSIPNVFVRPREAMKAADEAKARFAH
IDGDHLTLLNVYHAYKQHGDDSEWCYANFLNNRSLKSADNVRGQLVRICTRLQVQLVSTD
FNSRDYYTNIRKALVAGYFMQVAHLERTGHYLTAKDNQVVYLHPSTCLDHKPEWALYQEF
VLTSKNYIRTVTDIKGEWLVDLAPHYFDMTNFPAGEARRALERLYAKREKDRSGRF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcaaacgcaagctggaggtgtatgatggggtgccgcaggcgaatggcggcggc
ggtgcctaccagaacacggcggcgccgcccgccggcgacccccacgccaatatcaatcct
tacacgggacgcagctatagcgcacgctaccatcaaattttgtccacgcgtcagggcctg
cctgtgtggcaagccaaggccgatttcatcaacatggtgaacagcagccagacaatcatc
ctggtgggtgagacgggcagcggcaagacgacgcagattgcgcagttcatcgccgaggca
ggctactgcgccggcgggaagaaggtggtgtgcacgcagccacggcgggtggcggccatg
tccgtggcgcggcgtgtggcagaggagatggatgtggcgctaggggaggaggttggctac
tccattcgctttgaggagtgctccggcccccgcaccatcatcaagtttgccaccgatggc
atgcttctgcgtgaggccatgaccgacccgctgctggagaagtacagtgtgatcatcctg
gatgaggcgcacgagcgcacgctggccacagacgtgctatttggcctgctcaaggaggtg
ctgaagcagcggcaggacctgaagctggtagtgatgagcgcgacgctggaggcggagaag
ttccagggctactttctggacgcgccgctcatcaaggttccgggccggctgcaccctgtg
gaaatcttctacacacaggagccggagcgcgactatctggaggccgctatccgcaccgtg
gtgcagatccactcgtgcgagggccctggcgacatcctcgtctttctgacgggagaagag
gagattgaggatgcatgccgaaagatcaccaaggaggtgaacaacctgggtgacagcgtg
ggccccatcaaggtctaccccctctactccaccctccccccgcagcagcagcagcgcatc
tttgaccccgcgccgccggcggcacgccccggcggccccgccggccgcaagatcattgtt
tccactaacattgccgagactagtctgaccatcgatggcattgtgtttgtcatcgacccc
ggttttgctaagcagaaggtgtacaacccacgcatccgggtggagagcctgctcgtatcc
cccatctctcgcgcatctgcgcaccagcgcgccggccgtgcgggacgcaccaagcccggc
aaatgcttccggctctacaccgaggcctccttctacaaggacctgcaggagcagacgtac
cccgagatcctgcgctcgaacctgggctccgtggtgctgcagctcaagaagctgggcatt
gacgacctggtgcactttgacttcatggaccctcctgcccccgagacactcatgcgtgcc
ctggagatgctcaactacctgggtgccctggacgatgagggcaacctgacgcaggtgggc
accgtcatggccgagttcccgctcgacccgcagctgtccaagatgattgtggcggcaccc
gagttcaagtgctccaacgagatcctgagcatcgccgccatgctgtctattcccaacgtc
tttgtgcggccgcgcgaggcgatgaaggcggcagacgaggccaaggcgcggtttgcccac
atcgacggcgaccacctcacgcttctcaacgtgtaccacgcctacaagcagcacggcgat
gacagcgagtggtgctatgccaacttcctgaacaaccgctcgctgaagagcgcagacaac
gtccgcggccagctggtgcgtatctgcacgcggctgcaggtccagcttgtgtccactgac
ttcaactcccgcgactactacacaaacatacgcaaggcgctggtggcggggtacttcatg
caggtggcgcacctggagcgcaccgggcactacctcacagccaaggacaaccaggtggtg
tacctgcacccttccacctgcctggaccacaagcccgagtgggccctgtaccaggagttt
gtgctgaccagcaagaactacattcgcactgtgaccgacatcaagggcgagtggctggtg
gacctggcgccccactacttcgacatgaccaacttcccggcgggcgaggccaggagggcg
ctggagcggctgtacgccaagcgggagaaggaccggagcgggaggttctga
DBGET
integrated database retrieval system
