Chlorella variabilis: CHLNCDRAFT_54673
Help
Entry
CHLNCDRAFT_54673 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cvr
Chlorella variabilis
Pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_54673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_54673
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CHLNCDRAFT_54673
mRNA degradation factors
5'-3' decay
Decapping complex
CHLNCDRAFT_54673
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
WD40
Ge1_WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_EML
TSNAXIP1_N
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
17351523
NCBI-ProteinID:
XP_005844180
JGI:
ChlNC64A_1_54673
UniProt:
E1ZQ19
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MAVPGAGLLALLRKRTASKFEARSSAVHALEHAVAAGTVAEAARPQAQGRRIPPGPRYTY
DVDTHVPHEAQPQLPVTPVTLINTDYALHHWRQIAVGPSYICYGLKQGHIRVLSRHSAVR
ALLKGHTKPLTDLQFAAASPDAGHDSGSSSASSAFNEVLLASGGHDGQLFVWHLQLDEDN
ATIRETQQLHASFASAAGVSGDVLLSWHAPSRRVLAVGVGGKVLLVSVPADGGMEQLEFD
LDDNSTPDATVLPDWSGEAVTCLAFSPDGQLLAAGGAAGSVLVWQLQSLSAAGPGGSSSL
VATHSVAILAAADNGTAAGAAVGAVCWLPMPQGWALVTGNRNNAALQLWHSVSLEGSWKL
LQTLQFEGKSGQQEFYSHVDVVPAQQLVVLADTARKAIYTLHYSGSGADLQFDYVARFGV
AVPILSFTALWNPAGGEQGDSPLVELNCVQTTAVQQYSLDPALCYAAPDVSPEPQEHGVV
RRSSLLERHGQDLSIKPQPSTAVPMPSEALASGTPRNSCVAAAGIAPPAAVAAAERAAEP
VAADASEARAADAAPAPLLEPSIEGVVPLLASIPPLPPADAPESPQPRASGLLLAASCPP
AHAFACSSSATTSRNSASGSTDAGQWGGPAQPQPQHVLQRRIVNAAALPPPSAAREATGD
EGQVALPPSPAPPATAVASTQDAAVAAAVLEQMGGVHKKFVGHVSLMYRELLKAMKAELG
VQTAQQQQATAQLLAAAMEAQKQQIEAERAAVLAEERANIERLLTAISATLNQDLPSKLA
EAVRGEVDGMVDGLAAALVPAVQTALATSLPKDLAGAVKSAGLDKALAPAVAAGLGKPLQ
EAFRTAFTKQLVPAFEGATQSMFQQINTTFTAGFEQHLQASNSALAASLQAQQQLLRAHP
ATTVDVRGELSSLLRAGEYEQAFSRALGLQDVSTVGWLASQTDAASVLGCDPCPLSQGIL
LSLVQQLSADLQSNLGVKLAWIREAALLINPADPMLARHLRPVLEGVYAALQAAAGRLQG
AEANSCRLAMHAFNRLFNLV
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgccaggagcgggcctgctggccctcctgcgcaaacgcactgcaagcaagttt
gaggcgcgcagctctgcggtgcacgcgctggagcacgcagtggcagccggcacggtcgca
gaggcggcacggccgcaggcgcaggggcgccgcatcccgccggggcccagatatacgtat
gacgttgacacccatgtgccccatgaggcgcagccgcagctgccggtgactccagtcacg
ctgatcaacaccgactatgcgctgcaccactggaggcagatcgccgtcggccccagctac
atctgctacggcctcaagcagggccacatccgcgtgttgagtcgccactcggctgtgcga
gcccttctcaagggccacaccaagcccctcaccgacctgcagtttgcggcggcctcgccc
gacgcagggcatgacagcggcagcagcagtgcgtccagtgcattcaacgaagtgctgctg
gccagtggcggccatgacggtcagctgtttgtgtggcacctgcaactggatgaggacaat
gccaccatccgcgagacacagcagctgcatgccagctttgcgtcggcagcaggtgtttca
ggagacgtgctgttgtcatggcacgcgcccagccggcgcgtgcttgcggtgggggtggga
ggcaaagtgctgcttgtgtctgtgcctgctgacggcggcatggagcagctggagttcgac
ctcgatgataactctacgccagatgccactgtactgcccgactggagtggcgaggcggtg
acgtgcctggctttctcacctgacggccagctgctggctgctggcggcgctgccggctcc
gtgctcgtgtggcagctgcaatccttatcagccgcggggcccggcggcagctcctcactg
gtggccacccacagcgtggcaatccttgctgccgctgacaatggcactgctgctggcgct
gcggtcggcgcagtgtgctggctacccatgcctcagggctgggcgcttgtgacgggcaac
cgcaacaatgctgcgcttcagctgtggcacagtgtttccctggagggcagttggaagctg
ctccaaaccctgcagtttgagggcaagagcgggcagcaggagttttacagccacgtggat
gtggtgcccgcccagcagctggtggtgctggcagacaccgcgcgcaaggcaatctacacg
ctgcactactcgggttcgggtgccgacctgcagtttgattacgttgctcgctttggcgtg
gcagtcccgatactgtctttcactgctttgtggaaccccgcgggtggcgagcagggcgac
agcccgctagtggaactcaactgcgtgcagaccacggcggtgcagcagtacagcttggac
cccgcgctgtgctatgctgcgccggacgtatcgccagagcctcaggagcacggcgttgtg
cgccgcagcagcctgctggagcggcacggccaagacttgagcatcaagccgcagccttcg
actgccgtgcccatgccctcagaagctcttgctagcggcacacctcgcaatagctgcgtg
gcagcagctggcatcgcccctcccgcagccgtggcggcagcagagagggcggctgagccg
gtggcggctgatgccagcgaggcgagggcggcagacgcggcaccagcgccgctgcttgag
cccagcatcgaaggcgtcgtgccgctactggccagcatcccaccgctgccgcctgccgat
gcaccagagtcaccacagcccagggcaagcgggctgctgctggctgccagctgtccgcct
gcccatgcctttgcatgcagtagctctgcaaccactagccgcaattcagcttctggcagc
accgatgccggccagtggggcggccctgcacagccgcagccgcagcacgtgctgcagcgc
cggatcgttaatgcagctgctttgccacctccgtcagcagccagggaggcgacaggggat
gaggggcaggtggcattgccgccctcgccggccccaccagctacggctgttgccagcacc
caggatgcggctgtggcagctgcagtgctggagcagatggggggcgtgcacaaaaagttt
gtggggcatgtgtcgctcatgtaccgcgaactgctcaaggccatgaaggctgagcttggt
gtgcagacggcacagcaacagcaggccactgcacagctgctggcagcagctatggaggcg
cagaagcaacagatcgaggcggagcgggctgctgtcctagccgaggagcgagccaacatt
gaacgcctgctcaccgccatctccgccaccctcaaccaagacctgccttcaaagctggcc
gaggctgtccggggcgaggtggatggcatggtagacgggctggccgctgctttggtgccc
gcggtgcagacagcgttggccacctcgctgcccaaggatcttgcaggcgctgttaagtca
gcaggcctggacaaggcgctggcacccgcagtggcggctgggctggggaagccgctgcag
gaggccttccgcaccgccttcaccaagcagttggtgccagcatttgagggagccacgcag
tccatgttccagcagatcaacaccacgtttactgctggcttcgagcagcacctgcaggcc
tccaactcggcgctggcggcatccctccaagcgcaacagcagttgctgcgggcgcaccct
gcgaccacagtggatgtgcgcggcgagctgtcctcgctgctgcgggcgggcgagtatgaa
caggccttctctcgggcgctgggcctgcaggacgtgtccaccgtgggctggctggctagc
cagactgacgcagcttcggtgctggggtgcgacccctgccccctctctcaagggatcctg
ctcagcctggtccaacagttgtctgctgaccttcaatccaacctgggcgtgaagctggcc
tggatccgggaggcggcgctgctgatcaaccccgccgacccgatgctggcccgccacctg
cgccccgtgctggagggggtgtatgccgcgctgcaggctgcggcggggcggctgcagggc
gccgaggccaacagctgtcggctggcgatgcatgcattcaatcggttgttcaatttggtt
tga
DBGET
integrated database retrieval system