Chlorella variabilis: CHLNCDRAFT_59028
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Entry
CHLNCDRAFT_59028 CDS
T02924
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
cvr
Chlorella variabilis
Pathway
cvr03015
mRNA surveillance pathway
cvr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cvr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CHLNCDRAFT_59028
09123 Folding, sorting and degradation
03018 RNA degradation
CHLNCDRAFT_59028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvr03019
]
CHLNCDRAFT_59028
03041 Spliceosome [BR:
cvr03041
]
CHLNCDRAFT_59028
Messenger RNA biogenesis [BR:
cvr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CHLNCDRAFT_59028
mRNA cycle factors
Stress granule specific factors
CHLNCDRAFT_59028
Spliceosome [BR:
cvr03041
]
Complex C
Other components
Complex C specific factors
CHLNCDRAFT_59028
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
17351568
NCBI-ProteinID:
XP_005844200
JGI:
ChlNC64A_1_59028
UniProt:
E1ZQ58
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MASPTVATPVEAVAAGTPPAPTAAAPGAGTAAAATHNSSLYVGDLDRDVTEAQLFEVFSQ
IGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERALDQLNYTPLVGRPMRIMWSHRD
PAFRKSGVGNIFIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDE
SARLAIEKVNGMLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMFA
EHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAER
EAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDETLRTEFSQFGTITSAKVMVDSAGK
SRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRRDVRRAQLEQQYQQRVAMPPG
PRGPMAPGMFPPGGAPPMFYPPGPRGPMGPGMMNPYMMAGPGRGMPGRGPRGMMMPPQMM
GPGGARSGRGGRGGRGGRGEFMGRGRGPASGRGGRGRGEGIPAPPVGAPAAPAAAVTPTE
GGQLTAAMLAAAPAEQQKQLLGERLFPLVANVQPDLAGKITGMLLEMDNSELLLLLEDPT
ALDAKVEEAVSVLKQHNAIPDGAIVREKGGAGQA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccccactgtcgctactcccgtcgaggctgtcgctgctggcaccccgcccgcc
cccactgcggctgcccctggcgccggcaccgctgctgctgccacccacaactccagcctg
tatgtcggcgacctggatcgcgatgtcaccgaggcccagttgttcgaggtcttctcgcag
atcggcccggtggcctccattcgcgtttgccgtgatgccgtcacccgccgctccctgggc
tatgcgtacgtgaactacaacagtgtgctggacccggcggctgccgaacgtgcgctggat
cagctcaactacaccccgctggttggccgcccgatgcgcatcatgtggagccaccgcgac
cctgccttccgcaagtcgggggtcggcaacatcttcatcaagaacctggacaggtcggtg
gacaacaaagcgctccacgacaccttctccgcctttggcaacatcctgagctgcaaggtg
gcccaggatctcaagggcgagagcaagggctatgggtttgtgcattttgagaaggatgaa
tcggcacgcctggccattgagaaggtgaatggcatgctgctggagggcaagaaagtttat
gtggggcctttcctgcgccgctctgagcgctccagcgattccgaggtcaagttcacaaat
gtgtttgtgaagaatttggatgaggccgtgagcgatgatgaggtaaaggccatgtttgcg
gagcacggcaccgtcaactcgtgcatcatcatgcgggacgacgagggcaagagcaagggc
tttggctttatcaacttcgaggaacccgagcaggcggcctcagcggtgcaggccctgaat
gggaaggacgtgaattgcaaggagctgtacgtgggtcgcgcccagaagaaggcggagcgt
gaggccatgctgcgtgccaagtttgaggagcttcgatcagagcgcatcgccaagtaccaa
ggcatgaacctgtacgtcaagaacctgcatgatgacattgacgatgagacgctgcgcact
gagttctcccagtttggcaccatcacctccgcaaaggtcatggtggacagtgcgggcaag
agccgtggctttggctttgtgtgctacgccagccccgaggaggccacccgcgccgtgacc
gagatgaacgggcgcatgatcaagggcaagcccatctacgtcgcgctggcgcagcgccgt
gacgtgcgccgtgcccagctggagcagcagtaccagcagcgagtagccatgccgcccggc
ccccgcggccccatggcccctggcatgttcccaccaggtggcgccccgcccatgttctac
ccgcccgggccgcgtggccccatgggtcccggcatgatgaacccatacatgatggccggc
cccggccgcggcatgccggggcgtggcccccgcggcatgatgatgcccccgcagatgatg
ggtcccggtggtgcacgctctgggcgtggcggccgtggtggccgtggcggccgcggcgag
ttcatgggccgtggccgcggccctgccagtgggcgtggtggccgtgggcgcggggagggc
atcccggcaccacctgtcggagcgccagcggcacctgccgctgctgtgacgccgaccgag
ggtggccagctcaccgctgccatgcttgcggcggctccagctgagcaacagaagcagctg
ctgggcgagcgcctgttcccgctggtcgccaacgtgcagcccgacctggccggcaagatt
actggcatgctcctcgagatggacaactcagagctcctgctgctgctggaggatccaact
gcccttgatgccaaggtggaggaggcggtgtcggttctgaagcaacacaacgccatacct
gatggtgctattgtgcgcgagaagggcggagctggccaggcttaa
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