Centruroides vittatus (striped bark scorpion): 136969867
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Entry
136969867 CDS
T10332
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cvs Centruroides vittatus (striped bark scorpion)
Pathway
cvs03013
Nucleocytoplasmic transport
cvs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cvs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
136969867 (Upf1)
03015 mRNA surveillance pathway
136969867 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvs03019
]
136969867 (Upf1)
Enzymes [BR:
cvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
136969867 (Upf1)
5.6.2.5 RNA 5'-3' helicase
136969867 (Upf1)
Messenger RNA biogenesis [BR:
cvs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
136969867 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
136969867 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
NPHP3_N
DEAD
AAA_16
Helicase_RecD
nSTAND3
ATPase
SRP54
T2SSE
AAA
AAA_22
Motif
Other DBs
NCBI-GeneID:
136969867
NCBI-ProteinID:
XP_067120262
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGTDLLGADTQGTEFDFTDFTLPSQTQASQLEHTQSQASRS
QLNGIEIPLQNGLDRDVTAATQGLGELTFEEDEEDQYCTKDLPEHACKYCGIHDPCCVVQ
CNVCKRWFCNGRGNTSGSHILNHLVRAKHKEVTLHKDGPLGETVLECYSCGCRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDPEQWKPLIDDRSFLAWLVKVPQEQDQLRARQ
VTAQQINKLEELWKDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADY
DKKLKESQTQDNIEVRWDIGLNKKIIAYFTIAKSDTEMRLMHGDELRLRYLGELQKPWSG
VGHVIKIPDNYSEEVGIEMKTNLGVPTECTSNFVVDFVWKSTSFDRMQAALRKFAVDESS
VSPYIYHKLLGHEVEDVVLRYQLPKHFSAPNLPELNRSQVYAVKHALQRPLSLIQGPPGT
GKTVTSATIVYHLARQSNGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAISSPV
SFLALHNQIRNMEGYGLFCHSELNKLQQLKDETGELSSADEKRYRMLKKAHEKELLEAAD
VICCTCVGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPQLSKFPSNFFYEGSLQNGVYADERM
MKGVDFPWPQPDKPMFFYACQGQEEIAGSGTSYLNRTEAALVEKITTRFLKCSVKPEQIG
IITPYEGQRAYLVQYMQYNGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIG
FLNDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLNFYKENKVLVEGPLNHLKESMI
QFSKPRKLINTINPGGHFMHTTMYDAREAMIPGSVYDRSSHLNGPVAYNRTHDQISYISP
ERAQAAMANIPVPFGIFMNMAHIPPRFYNQHQQALQAHQNQRNRTGNRRGGTKQMPGRRT
MQDRMNPNLSQSGYNSQASQDVMFSQGPLTQGQLTMSQMSQPAFPGLSQPGLSQPELSQD
TYLVDEFRSQTEGMLSQDSTYQGDRAFFHASQGGQFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgaggcttatggaccaagttctcagactttaacatttttggatacggaggaa
ggaacggatttgctgggtgcagatacacaaggaacggaatttgatttcaccgatttcacc
ttaccttctcagactcaagcatcacaattagaacatacgcaaagtcaggcgtcaagaagt
cagttaaatggaatagaaatcccattacagaatggtttggatagagatgtcactgctgcc
acccaaggattaggtgaattaacatttgaagaagatgaagaagatcaatattgcactaaa
gatctgcctgaacatgcatgcaagtactgtggtattcatgatccatgttgtgttgtacag
tgtaatgtgtgcaaaagatggttttgtaatggacgaggaaatacctctgggagccatatc
ttgaaccacttagtaagagctaagcataaggaagttactttgcataaagatggtccgttg
ggtgaaactgtacttgaatgttatagttgtggatgtcgtaatgtctttgtattgggattt
attccagctaaagctgattctgttgttgtccttctttgtcgtcaaccatgtgcagcacag
agtagtttaaaagatatgaattgggacccagaacaatggaaaccattaattgatgatagg
agttttttagcatggttggtaaaagtcccacaagaacaagatcagttgagagctcgtcaa
gttactgctcaacaaataaataaattggaagaattatggaaggataatgttgatgcaact
tttcaagatttagaaaaaccaggagttgatgaagaacctcagcaagttctcctgagatat
gaagatggatatcagtatcaaaatatatttggaccacttgttaaaatggaagctgactat
gataaaaagttaaaggaatcacaaacacaggataatattgaagtgcggtgggacattggt
ctgaataagaaaattattgcttatttcactattgcaaaatctgatacagaaatgagactt
atgcatggagatgaattaagattgcgctatcttggtgaattgcagaaaccttggtcagga
gtgggtcatgtcatcaaaataccagataactacagcgaagaagttggtattgaaatgaaa
acaaatcttggtgtccctactgaatgtacttcaaattttgttgttgattttgtttggaag
tctacctcatttgataggatgcaagctgcattacgtaaatttgctgtagatgaatcttct
gtttctccctatatatatcataaattattaggacatgaagtagaagatgttgttttgaga
tatcagttaccaaaacatttttcagcacctaatcttcctgaattaaatagatcccaagtt
tatgcagtaaaacatgctttacaaagaccattatctcttattcagggcccacctggaact
ggaaaaacagtaacttctgctactatagtgtatcatttagctcgtcaaagtaatgggcct
gtacttgtttgtgcacctagtaacattgcagttgatcaattaaccgaaaaaatccatcgt
actggattaaaggtggttcgactttgtgcaaaaagccgtgaagcaattagttcacctgtt
tcatttctagctcttcacaatcaaattaggaatatggaagggtatggattattttgtcat
tcagagttgaacaaactgcaacagttgaaagatgaaacaggtgaattatcatcagcagat
gagaagcgttatagaatgcttaaaaaagctcatgagaaggaattattagaggctgcagat
gtcatttgttgtacttgcgttggtgctggtgatccacgattagcacgattcaaatttcat
tctattttgattgatgaaagtatgcaagctactgaaccagagtgtatggtaccagtagta
ttaggtgcaaaacagttaattcttgttggagatcattgtcaattaggaccagtcgtgatg
tgcaagaaagctgcacgagctggtttgtctcagtcattatttgaaagattagtagttctt
ggaatacgtccatttcgtttggaagtacagtatcgtatgcatccccaacttagcaaattt
ccttccaatttcttttatgaaggatcattacaaaatggtgtttatgctgatgaaagaatg
atgaaaggtgtagattttccatggcctcaacctgacaaaccaatgtttttctatgcttgt
caaggacaagaagaaatagcaggatcaggtacatcttacctaaataggacagaagctgca
ttggttgaaaaaataacaacaagatttttgaagtgtagtgtaaaacctgagcagatagga
attataacaccctatgaaggacaaagagcttaccttgttcaatatatgcagtataatgga
tcacttcatgcaaaattatatcaagaaattgaagtagcaagtgtcgatgcttttcaagga
agagagaaagatcttattataatgtcttgtgtacgatctaatgaacatcaaggaattggt
tttctgaatgatcctaggcgtttaaatgttgctcttacaagagcaagatatggcattatt
attgttggaaatccaaaagttttatcaaagcaacctttatggaatcatttattaaacttt
tataaggaaaacaaagttcttgtggaaggtcccttgaatcatttaaaagaaagtatgatc
caatttagtaaacctagaaaattgattaatacaataaatccgggtggtcattttatgcac
acaacaatgtatgatgcaagagaagctatgattcctggaagtgtatatgatcgttcatca
catttaaatggtccagttgcatacaatcgaactcacgatcagatctcgtatataagccca
gagagagcacaagccgctatggctaatattccagttccttttggaatatttatgaatatg
gctcatattccaccaagattttataatcaacatcaacaggcattacaagcccatcaaaac
caacgtaatcgtactggaaaccgaaggggcggaacaaaacaaatgcctggtcgcagaaca
atgcaagatcgtatgaatccaaatctatctcagtctggctacaatagtcaagcgagtcag
gatgtcatgttttctcaaggaccattaactcaaggacaactaactatgagtcagatgagc
cagccagcttttcctggtctttctcaaccaggtttatcacagcctgaactctctcaggat
acgtacttggttgacgaattccgttctcagacggaaggtatgctttctcaagattcaaca
taccaaggagatcgggcatttttccatgcctcacaaggtggtcagttttcccagccttat
tga
DBGET
integrated database retrieval system
