Corynebacterium vitaeruminis: B843_04910
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Entry
B843_04910 CDS
T03042
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvt
Corynebacterium vitaeruminis
Pathway
cvt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B843_04910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvt03400
]
B843_04910
Enzymes [BR:
cvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B843_04910
DNA repair and recombination proteins [BR:
cvt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B843_04910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
DUF3638
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHI22371
UniProt:
W5XZI6
LinkDB
All DBs
Position
1050888..1054484
Genome browser
AA seq
1198 aa
AA seq
DB search
MAPMLAGLAKVAARDPKIKGLLTHVGEKSLHITGIDQVRPWMLAALSQRTQVLAVTATGR
EAEDLTAELKAILGEKVAWFPAWETLPHERLSPAADIAGARMRVLDHLDDYSVVVTAARG
LCQPILKEAEGREAFRLTEGREYNFEELGEELVFRAYQRVDLVAKKGEFAMRGGILDVFP
TTAEYPVRVEFWGDEISEMRAFSVADQRAIPDLEVKEVEVYPARELLITDAVAQRAQELA
VKHGSHPTLQELLSKIAEKMPADGMEALMPALVDTPFITLPELMPGSHVVAIGPEKIRTR
IADLQATDAEFLAAGWEAAAMGADGPLATKGLDLDASTYRSYESLEKSSGVWWTFAPPGM
FEADESDTLPLDFEPGPTPRGDLEKIDQMMALLLAHTTSGGRAAFIAPAQGAIKRMVERF
KEKGIPTKVATPGWEPSEGEVTLYQAMSHAGLVIGGLVVITETDLTGNRVGDIAGAKRRP
AKRRNRVDPLALKTGDFVVHETHGIGRFLKMTERTIKTGDETSRREYIVLEYAPSKRGQP
ADQLYVPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAVREIAGELVELYAKRQA
APGHAFAPDTPWQREMEDNFPFVETEDQMLAIDAVKADMEKPAPMDRVVVGDVGYGKTEV
AVRAAFKAVQDGKQVAVLVPTTLLAQQHLATFEERMAGFPVNIKGLSRFTSAHDAKEILS
GLADGTVDIVIGTHRLLQTGVQWKNLGLVVVDEEQRFGVEHKEHIKAMRTHVDVLTMSAT
PIPRTLEMSMAGIREMSTILTPPQDRHPILTYVGPQEEKQIAAAIRRELLRDGQVFYVHN
KVSDIEKKARELRELLPEARIVVAHGQMSEDVLEQTVQGFWDREYDVLVCTTIVETGLDI
ANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGQTLTENSYDRLATIAQNN
DLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVEAFRALADGKLVDA
TDKGPKEIRIDLPVDAHIPESYISAERLRLEVYRKLAASTSESDIRLAVEEMEDRFGPLP
KEVERLLSVARLRHLARKAGVGDIGVQGTRIKVHPVELADSKQVRLKRLFPGAVYRAAAK
AIQLPFPKAGRNVTDPKLRDVDLVQWAADFLSTMFDLEKIDVRGGKKLKKKVVSAREA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaatgcttgctggcctagcaaaggtcgcggcgcgggatcccaagatcaagggg
ctgctcacccacgttggtgagaagagcctgcacatcacgggaatcgatcaggtgcgcccc
tggatgctggccgccctttcccagcgcacccaggtcctggcggttacggccacgggccgg
gaggcggaggacctcaccgccgagctcaaggccatcctgggggagaaggtcgcctggttc
ccggcgtgggagaccctgccgcacgagcggctgagcccggccgcagacatcgcgggcgcg
cgcatgcgggtgctcgatcacctggatgactattccgtggtggtcacggccgcgcgcggc
ctgtgccagccgatcctcaaggaggccgaggggcgggaggccttccgactgacggagggg
cgggaatacaacttcgaggagctgggggaggagctcgtcttccgggcgtaccagcgggtc
gacctagtggccaagaagggtgagtttgccatgcgcggaggcatcctcgacgtgttcccg
acgaccgccgagtacccggtccgcgtggagttctggggcgacgagatctccgagatgcgc
gccttctccgtggccgatcagcgcgccatcccggaccttgaagtcaaagaggtggaggtc
tatccggcgcgcgagctgctcatcacagatgcggtggcccagcgagcgcaggagctggcc
gtcaagcacggctcccacccgacgctgcaggagctgctgagcaagatcgctgagaagatg
cccgccgacggcatggaggcgctcatgcccgcgctggtggacaccccgttcattaccctg
cccgagctgatgcccgggtcgcacgtcgtggccatcgggccggagaagatccgcacccgc
atcgcggacctgcaggccaccgacgccgagttcctcgccgcgggctgggaggctgcagcg
atgggggccgacgggccgcttgcgaccaagggactagacctcgacgccagcacgtaccgc
tcctatgagtcgctcgaaaaatcttcgggggtttggtggaccttcgcccctcccgggatg
ttcgaggccgacgagtcagacaccctgccgctcgacttcgagccgggcccgacgccgagg
ggcgatctggagaagatcgaccagatgatggccctgctgcttgcgcacacgacctcgggc
gggcgtgcggcgttcattgcgcccgcgcagggagcgatcaagcgcatggtggagcgcttc
aaggagaagggcatcccgaccaaggtagcgacccccgggtgggagccctcagaaggggag
gtgaccctctaccaggcgatgagccacgcgggcctcgtgatcggcgggctcgtggtcatc
accgagacggacctgacgggcaaccgcgtgggcgacatcgcgggagcgaagcgccgccct
gccaagcgccggaaccgggtggatccgctggcgctcaagaccggcgacttcgtcgtccac
gagacccacggcatcggccgcttcctcaagatgaccgagcgcacgatcaagaccggcgac
gagacctcgcgccgggagtacatcgtgctggagtacgccccgagcaagcgcgggcagccc
gcggaccagctctacgttcccatggactcgctcgacatgctctcgcgctacgtcggcggc
gagaaaccgacgctgtccaagatgggcggctcggactggaagaacaccaagaagaaggcc
cgcgccgcggtgcgcgagatcgcgggcgagctggtcgagctgtacgccaagcgccaggcc
gcgcccggccacgcgttcgcgccggacaccccctggcagcgggagatggaggacaacttc
cccttcgtcgagaccgaggaccagatgctggccatcgacgcggtcaaagcggacatggaa
aagcccgcgccgatggaccgcgtggtggtcggcgacgtcggctacggaaagacggaggtg
gcggtccgcgcggcgttcaaggcggtgcaagacggcaagcaggtcgcggtgctcgtgccc
acgacgctgctcgcgcagcagcacctggccaccttcgaggagcgcatggcgggcttcccg
gtgaacatcaagggcctgtcgcggtttacctccgcccacgacgcgaaggagatcctctcc
gggctggccgacgggacggtggacatcgtcatcggcacccaccgcctgctgcagacgggc
gtgcagtggaagaacttggggctcgtcgtggtggacgaggagcagcgcttcggcgtggag
cacaaggagcacatcaaagcgatgcgcacgcacgtcgacgtgctcaccatgtcggccacc
ccgatcccgaggaccctggagatgtccatggcgggcatccgcgagatgtccaccatcctc
accccgccgcaggaccgacacccgatcctcacctacgtgggcccacaggaggagaagcag
atcgcggcggcgatccggcgcgagctcttgcgagacggccaggtcttctacgtgcacaac
aaggtctcggacatcgagaagaaggcccgcgagctgcgggagctgttgccggaggcgcgc
atcgtcgtggcgcacggccagatgagcgaagacgtgctcgagcagaccgtccaggggttc
tgggaccgcgagtacgacgtgctcgtgtgcacgactatcgtcgagaccggcctcgacatc
gccaacgcgaacaccctcatcgtggagaacgcgcaccacatggggctctcgcagctccac
cagctgcgcggccgcgtggggcgctcccgcgagcggggttacgcctacttcctctatccc
aaggggcagacgctgacggagaactcctacgaccgcctcgccaccatcgcgcagaacaac
gacctcggcgcgggcatggcggtggccatgaaggacctggagatgcgcggcgccggcaac
gtgctcggcgcgcagcagtcgggccacatcgcgggcgtgggcttcgacctctacgtgcgg
ctggtgggcgaggccgtcgaggccttccgtgcgctggccgacggtaagctcgtcgatgct
accgacaaggggcccaaggagatccgcatcgacctcccggtggacgcccacatccccgag
tcgtacatcagcgccgagcgcctgcggctcgaggtttaccggaaactcgctgcgtcgaca
agcgaaagcgacatccggctggccgtcgaagagatggaagaccgcttcgggccgctgcct
aaggaagtcgagcggctgctgtccgtcgcgaggttgcgccaccttgccaggaaggcgggc
gtgggggatatcggggtgcagggcacccgcattaaggtgcacccggtcgagctggccgat
tccaagcaggttcggctcaagcggctgttccccggagcggtctaccgggccgcggcgaag
gcgatccagctgccgttccccaaggccggccgcaacgtgaccgaccccaagctgagggac
gttgacctggtgcaatgggcggcggatttcctctccaccatgtttgacctcgagaagatc
gacgtgcgcggcggcaagaagctgaaaaagaaggtcgtgtccgcccgggaagcttaa
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