Corynebacterium vitaeruminis: B843_07985
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Entry
B843_07985 CDS
T03042
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cvt
Corynebacterium vitaeruminis
Brite
KEGG Orthology (KO) [BR:
cvt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cvt03019
]
B843_07985
Enzymes [BR:
cvt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B843_07985
Messenger RNA biogenesis [BR:
cvt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B843_07985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
ResIII
NACHT
T2SSE
NTPase_1
AAA_23
AAA_30
AAA_24
PhoH
AAA_25
TsaE
ABC_tran
ParD
Motif
Other DBs
NCBI-ProteinID:
AHI22982
UniProt:
W5Y1B1
LinkDB
All DBs
Position
1759425..1763414
Genome browser
AA seq
1329 aa
AA seq
DB search
MNNHADSPRHPSPRGNHPRHAKRKATPPNPEALRRRDELLSQLELVSLADDYGFRRRLHK
ARSAAAFDAIANDITRAAEDVELRRLSIPEISFPEQLPVSARKDDIAEAIANHQVVIIAG
ETGSGKTTQIPKICLELGRGVRGMIGHTQPRRLAARTVAERIAAETETEIGDLVGYAIRF
DDVVSKQTAVKIMTDGILLAEMQRDRYLNAYDTIIIDEAHERSLNIDFLLGYLKRLLPKR
PDLKVIITSATIDPERFAEHFADSEGNPAPIIEVSGRTYPVEILYRPLQAQVGEKTVDID
PVDGLIDALQELMGYGDGDILCFFAGEADIREAREAIEGQKWRGAEVVPLYGRLSNEEQH
KVFRPHSGRRIVLATNIAETSLTVPGIHFVVDTGTARISRYSLKNKVQRLPIEPISQASA
NQRSGRCGRVADGIAIRLYSEEDFEARPEFTDPEILRTNLASVILQMASLRLGDIDEFPF
IQKPDTRSIRDGLLLLHELGALTNSTSENGSPTLTRVGRTLARIPVDPRMARMLVAGQQL
GCLGAVYVIVAGLSIQDIRERPLEKQAQADQLHARFRDKTSDFLTYLNLWNYISGERAQL
SGNAFKKKMQAEFLHYMRIREWWDLVRQLQNIGDQIGWDKPADDVEKPDEDAIHRSLLSG
LLSHIGIRVAESREFQGARNTRFAIFPGSALSKKPPQFIMASALVETSRLWARDVAAIDP
RWVEELSQDLLKHQYSEPHWSTKHVNAMCYERATLYGVPIVVDRLIPFHRVEPEDARALF
IRHALVQGEWTTHHAFYKKNSEKLAEAEELEAKARRRDLLVDEDSLFDFYDARVPESVYS
GVTFDRWWKKASREDATLLDFDPDKLLHDDAQEVTEEQFPSTWYQNSLKLELSYVFEPGA
PDDGVTMQVPIPLLAGISEEGCEWLVPGVRLELVTELIRSLPKHIRRSVVPAPNFAERIL
PSLHPDEGGLLEQIAQRLGEITHITIEPGDFDQTKLPAHLRMRYAAVDRHGKVIDSDRDL
DALKRRRAGQIKSSVSRVNRRIEQKETTTWTRDTLGEVKEAIQTTVDGQKVKAYPALVAT
PNGIAVRAMPTKEEAEASIFSANLTMLLREITVNTQKTLNGLPLKQRVAVENYPHGGPEG
LVNDARTAAIRDLMMEHGGPVRTPEEFQSLLSTVRQLVAGRVRQMIVALAPGLVSYFDIQ
NQLKGWKGAAIDDLNRQLDFLLPEHAVSKHGVSRLKHLPRYLQAMSIRLEEMDRNPGKDQ
QRQEVVEKLEAQLSQKVSSARKGSIRVSNIRDIQWQLQELRVSLFAQRLGTAQSVSERKI
AKAIQSLGA
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaccacgctgactccccccggcatccctcgccccgcggcaaccacccgcgccac
gcgaaaaggaaggcgactccgccaaaccccgaggccttaaggcgcagggatgagctcctt
tcccaactcgaattagttagccttgccgacgactacggtttccggcgccggctccacaag
gcgcgctccgcggccgccttcgacgccatcgccaacgacatcacccgcgcggcggaagac
gtggagctgcgcaggctgtccataccggagatctccttccccgagcagctgcccgtctcg
gcccgcaaggacgacatcgccgaggccatcgccaatcaccaggtcgtgatcatcgctggc
gagaccggctccggcaagaccacccagatccccaagatctgcctcgagctcggccgcggc
gtgcggggaatgatcgggcacacccagccgcgcaggctcgcagcccgcacggtcgccgag
cgcatcgccgccgagaccgagaccgaaatcggcgatctagtcggctacgccatccgcttc
gacgacgtggtctccaagcagaccgccgtgaagatcatgacggacggcatcctgctggct
gagatgcagcgggaccgctacctcaacgcctacgacacgatcatcatcgacgaggcgcac
gagcgcagcctcaacatcgacttcctgctcggctacctcaagcggcttctccccaagcgc
cccgacctcaaggtgatcatcacctcggcgaccatcgaccccgagcgctttgcggagcac
tttgccgactccgagggaaaccccgctcccatcatcgaggtgtccggacgcacctacccc
gtcgagatcctctaccggccgctgcaggcacaggtgggcgagaagacggtcgacatcgac
cccgtcgacggcctcatcgacgccctgcaagagctgatgggctacggcgacggcgacatc
ctgtgcttcttcgcaggcgaggccgacatccgcgaggcgagggaggccatcgagggccag
aagtggcgcggcgccgaggtcgttcccctctacggccggctgtccaacgaggagcagcac
aaggtgtttcgcccgcactccgggcgccgcatcgtgctggccaccaacatcgccgagacc
tcgctgaccgtgcccggcatccacttcgtggtggacaccggaaccgcccgcatctcccgc
tactcgctcaaaaacaaggttcagcgcttgcctatcgagcccatctcgcaggccagcgcc
aaccagcgctcgggacgatgcggccgcgttgccgacggcatcgccatccgcctgtactcg
gaggaggacttcgaggcgcgcccggagttcaccgaccccgagatcctgcgcaccaacctg
gccagcgtcatccttcagatggccagccttcgcctaggcgacatcgacgagttcccgttc
atccagaagccggacacccgctccattcgcgacggcctgctgctgctccacgagctcggc
gcgctgaccaactccacttcggagaacggctccccgacgctcacccgcgtcggacgcacg
ctcgcgaggatcccggtcgacccgcggatggcgcgcatgctcgtcgccggacagcagctg
ggctgcctgggcgcggtctacgtcatcgtcgccgggctgtccatccaggacattcgggaa
cgccccttggaaaaacaggcccaggccgaccagctccacgcccggtttagggacaagacc
agcgacttcctcacctacctcaacctgtggaactacatctccggcgagcgcgcccagctg
tccggcaacgccttcaagaagaagatgcaggcagagttccttcactacatgcgtatccgc
gagtggtgggatcttgtccgccagctgcagaacatcggtgaccagatcggctgggacaag
ccggcggacgacgtggaaaagccggacgaggacgccatccaccgctcgctgctgtcgggt
ttgctctcccacattggtatccgggtcgccgagtcgagggagtttcagggcgccaggaac
acccgctttgcgatcttcccgggctccgcgctgtccaagaagccgccgcagttcatcatg
gcctcggcgctcgtggagacctccaggctgtgggcgcgcgacgtcgcggcgatcgacccg
cgctgggtcgaggagctctcccaggatctgctcaagcatcagtactccgagccccactgg
tcgacgaagcacgtcaacgcgatgtgctacgagcgcgccacgctctacggcgtgcccatc
gtcgtcgaccggctcatcccctttcatcgggtcgagcctgaggacgcgcgtgcgctgttc
atccggcacgccctcgttcagggcgagtggaccacccaccacgccttttacaagaagaac
agcgagaagctggccgaggccgaggagctggaggcgaaggctcgccgccgcgacttgctg
gtggatgaggacagcctcttcgacttctacgacgcccgcgtgcccgagtccgtctactcc
ggcgtcaccttcgaccgctggtggaagaaggcctcccgcgaggacgcaaccctcctcgac
ttcgacccggacaagctgctgcacgacgacgcccaggaggtgaccgaggaacagttcccg
agcacctggtaccagaactccctcaagctcgagctctcctacgtgttcgagccgggcgca
cccgacgacggcgtgaccatgcaggtccccatccccctgctcgctggcatcagcgaggag
ggctgcgagtggctggtccccggcgtgcgcctcgagctcgtcaccgagctcatccgctcg
ctgcccaagcacatccgccgctcggttgtccccgcccccaacttcgccgagcgcatcctc
ccctcgctccatcccgacgagggcggcctgttggagcagatcgcgcagcgcctaggcgag
atcacgcacatcaccatcgagcccggtgacttcgaccagacgaagctgcccgcccacctg
cgcatgcgatacgccgccgtcgaccgccacggcaaggtgatcgactccgaccgcgacctc
gacgccctcaagcgccgccgcgcgggacagatcaagtcgtccgtgtcgcgggtcaaccgc
cgcatcgagcagaaggaaacgactacttggacaagggacaccctcggcgaggtcaaggag
gccatccagaccaccgtcgacgggcagaaggtcaaggcctaccccgcgctcgtggccacc
cccaacggcatcgcggtcagggccatgcccacgaaggaggaggcagaggcgtcgatcttc
agcgcgaacctcaccatgctgctgcgtgagatcacggtgaacacccagaagacgctcaac
gggctccccctcaagcagcgcgtcgcggtggaaaactacccgcacggcggcccggaaggc
ttggtcaacgatgcccgcaccgcggcgatccgcgacctcatgatggagcacggcgggccc
gtacgcacgccggaggagttccagagcctgctctccaccgtccggcagctcgtggcgggg
agggtgcgacaaatgatcgtcgcgctcgcacccggtctggtgtcctactttgacatccag
aaccagctcaaaggctggaagggcgccgccatcgacgacctcaaccggcagctggacttc
ctgctgcccgagcacgcggtgtccaagcacggcgtatcacggctcaagcacctcccccgc
tacctgcaggccatgagcatccggctcgaggagatggacaggaaccccggcaaggaccag
cagcgacaggaagtcgtggaaaagctcgaggcacagctgagccagaaagtgtcctcggca
cggaagggctccatccgggtgtcaaacatccgcgacatccagtggcagctgcaggagctt
cgcgtgagcctgttcgcacagcgcctgggtaccgcccagagcgtttccgagcgcaagatc
gccaaggcgattcagtcgctcggggcctag
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