Campylobacter vulpis: CVULP_1072
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Entry
CVULP_1072 CDS
T08642
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cvu
Campylobacter vulpis
Pathway
cvu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVULP_1072 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cvu03400
]
CVULP_1072 (mfd)
Enzymes [BR:
cvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVULP_1072 (mfd)
DNA repair and recombination proteins [BR:
cvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVULP_1072 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNF78089
LinkDB
All DBs
Position
complement(1059286..1062210)
Genome browser
AA seq
974 aa
AA seq
DB search
MQASFFEYLKKGHFCELLLCENEKEADLLAQVSAFFEIKSFVLPDFRAEFGDDLRAFSKE
LFELCKVLNAYHKENSKKILISPLASVLKKLPSKKHLQGFILDKTKPFNVELLKDEFLRL
GYEFVDMVQDKGELSLRGEVLDIFCINEEKPVRILFFGEEIESIRYFDLDTQKSIPSELD
KLEICPFLSHFSQSAYEEFEERLESFESKALIKDINSLGFWCVDDFEDYLKLDFKSIKKF
DTSFENVDFINTKILPEASVYRDLQSVYNQDFFALHQNKKITILAQNEALFKQLELDMSS
VIFKQSALRLNVISSDEIILSLNKKDKKRQKRKANLILDELKIGDFIVHEDYGVGKFLGL
EMLNISGAKKEFVALSYQNNDKLLLPVENLYMIDKYLGVGGAIPLLDRLGKSTFIKLKER
LKTKLLALASQIIAMAAKRALIKPKELKIDLEAQADFVQRAGFSYTEDQVKACEEILEDF
KSSRVMDRLLSGDVGFGKTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKRRFEEF
HLKVFKLDRFTSAKEKKHLLEELKKNTPCVVVGTHALLSVECENVALVIIDEEHKFGVKQ
KEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSYSILQTPPEDRLDVRSFVRESEDALL
KEAILRELRRGGQIFYIHNHIASIKQCEKHLKNLFKDLRILILHSKIDAKTTEEEMLKFE
NKEYDLLLCTSIVESGIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSHKQGYCYFLVED
KANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYLKM
LEDELNKLSKNESVRENKLDLKLGINAFLNPDLIAEDSLRLELYRRLSKCEDNALLYEIE
AEIEDRFGKLDLYTKQFLALIRIKILASGKFKAISNYMQNIQLVKLNDEKEVIKAKSKDE
DDILEAILVHLRKA
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgtctttttttgagtatctcaaaaagggtcatttttgcgaattgttgctttgt
gaaaatgaaaaagaagcagacttgcttgctcaagtgagtgccttttttgagataaaaagc
tttgttttacctgattttagagcggaatttggcgatgatttacgcgctttttctaaagag
ctttttgagctttgtaaagttttaaatgcttaccataaagaaaattccaaaaaaattctc
atttctcctttagcaagtgttttgaaaaaacttccatcaaaaaagcatttgcaaggtttt
atactggataaaaccaagccttttaatgtggagcttttaaaagatgaatttttacgtttg
ggttatgaatttgtcgatatggtgcaagataagggagagctttctttaagaggggaggtg
cttgatattttttgcattaatgaagaaaagcctgtgcgaattttgttttttggggaggag
attgagagcattagatattttgatttagacacgcaaaaatctatcccaagtgagcttgat
aaacttgaaatttgcccctttttaagccatttttctcaaagtgcttatgaggaatttgag
gagaggttggagagctttgaaagtaaggctttgattaaggatattaattctttgggtttt
tggtgcgttgatgattttgaggattatttaaagcttgattttaaaagcattaaaaaattt
gatacaagctttgaaaatgttgattttatcaatacaaaaattttaccagaagctagtgtt
tatagagatttgcaaagtgtttataatcaagattttttcgctctgcatcaaaataaaaaa
attactattttagcacaaaatgaagccctttttaagcaacttgaacttgatatgtcaagt
gtgatttttaagcaaagtgctttaaggcttaatgttattagtagtgatgagattatactt
tctttaaataaaaaagataaaaaaaggcaaaaacgcaaggcaaatttaatcttagacgag
cttaaaatcggcgattttatcgtgcatgaggattatggagtggggaaatttttagggctt
gaaatgctgaatatttctggtgctaaaaaggaatttgtcgcactttcatatcaaaataat
gacaaacttctcttacctgtggaaaatctttatatgattgataaatatttgggtgttggg
ggtgctatacccttgctagatagactgggaaaaagcacttttataaagcttaaagaaagg
cttaaaactaagcttttagcccttgcttcgcaaattattgctatggcagcaaaaagggcg
ttaattaagcctaaggagcttaaaatcgaccttgaagcacaggcggattttgtgcaaagg
gcagggttttcctacacggaagaccaagtcaaagcttgtgaagaaattttagaggatttt
aaaagctctagggtgatggatagattattaagcggtgatgtgggctttggtaaaacagaa
gtagcgatgaatgccatttttcccgtgctaaaaagtggctttagcgtcttttttttcgtg
ccaacgacccttttatcacatcagcattatcaaagtcttaaaaggcgttttgaggaattt
catcttaaggtttttaagcttgatcgctttacaagtgctaaggaaaaaaagcatttacta
gaggagcttaaaaaaaacacgccttgcgttgttgtcggcacacacgcacttttaagcgtt
gagtgtgaaaatgtcgctttggtgattatcgatgaggagcataaatttggcgtgaaacaa
aaagaaaaactcaaagaattttcccaaaattcccatcttctttcgatgtctgctacgcct
ataccaagaagcttaaatcaagctttaagctccattaaatcttatagtattttacaaacc
ccgcctgaagatagacttgatgtaagaagttttgtaagagagagcgaggacgcacttctt
aaagaggctattttaagagagcttagaagaggggggcaaattttttatatccataatcat
attgcaagtattaagcagtgtgaaaagcatttaaaaaacctttttaaagacctaagaatt
cttattttacactctaaaatagacgctaaaaccacagaggaagagatgcttaaatttgaa
aataaagagtatgacttgcttttatgcacttcgattgtggaaagtggtatagatttgcct
aatgttaataccatcatcattgaaaaaagtgagcgttttggtatggctgatttacatcag
cttagaggaagagttggcaggagtcataagcagggttattgttattttttagttgaggat
aaggcaaatttgagtgaggcggctttaaaaaggcttgtttctttggagagtaattctttt
cttggggcgggttctttactagcttatcacgatcttgagataagaggaggagggaattta
ctagggcttgatcaaagcggacatatagaacaaattggttatagcctttatcttaaaatg
cttgaagatgagttaaataagcttagtaaaaatgaaagcgtgcgtgaaaataagcttgat
ttaaaacttggtatcaatgcctttttaaaccctgatttaatagctgaggatagtttaagg
ctagagctttatcgccgtcttagcaagtgtgaggataatgctttgctttatgagattgag
gcggagattgaggatagatttggcaaacttgatctttatacgaagcaatttttagcactc
attcgcattaaaattttagccagtggaaaatttaaggcaattagcaattatatgcagaat
atccagctagtcaagcttaacgatgaaaaagaagtgattaaggctaaaagcaaagatgaa
gatgatattttagaggctattttggtgcatttaagaaaggcttaa
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