Crocosphaera watsonii: CwatDRAFT_3593
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Entry
CwatDRAFT_3593 CDS
T05097
Name
(GenBank) Exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cwa
Crocosphaera watsonii
Pathway
cwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CwatDRAFT_3593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwa03019
]
CwatDRAFT_3593
03016 Transfer RNA biogenesis [BR:
cwa03016
]
CwatDRAFT_3593
Enzymes [BR:
cwa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CwatDRAFT_3593
Messenger RNA biogenesis [BR:
cwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CwatDRAFT_3593
Transfer RNA biogenesis [BR:
cwa03016
]
Prokaryotic type
tRNA degradation factors
CwatDRAFT_3593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
dsrm
Motif
Other DBs
NCBI-ProteinID:
EAM50567
UniProt:
Q4C334
LinkDB
All DBs
Position
complement(3408..5297)
AA seq
629 aa
AA seq
DB search
MAPSLIPHDEINQLLQEPLNIDDRQQVLGFTIDGETSKDLDDALWIEPNQSGVIISVHIA
DVTALVPPNSQLEQQAFSRVETRYLATSNNPMFPRQLSEDKLSLLEDKPRWTVTIRITLD
EAANIKKTQLLSTHLNSIKKFSYVSADKTLNDPSQPLFQVLRYCELWAQKLALKRQKGGA
FGQSTIAGVSLDEEGRLIETPLYHSQKIIQEFMVLANTAVASLAEEHRLPILYRNHTASA
IAPESKLLIETLNNLGLPELVRQRLQSWLNPATYSPALVGHFAMSVGAYTHFTSPIRRFA
DYINHRVLKAVFIEQKESPYTVEELQAIAKHINDKRQEIKEKRNEHFREERLAKTVTILN
KKANITTLSDKEFSQIIKDSLKVSKLDKLVPEAQQRLENRTLKPSDLYYLVFGEYENPDN
RTLIKDELLNHLKEQPTLATQILQIAATIGQTTVDYLDKKMTSGKFAFWTVFDEKTTSQP
SIASNKQTARHQSNCNWLQGKLEDKLQEVTAIDQTALNDKIIEESPVSAPATVVNEEPLD
LSTVSSEAINNPIAYLHTTLQRLKLKNPVYSYNKIDDQWRCCCQVQWLDEILIETEALGQ
NKKEGKTQASLKAIIELENYVVNEEFPIE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggccccttctcttatccctcatgatgaaatcaatcaactgttgcaagaacccttaaat
attgatgatcggcaacaggttttaggatttaccattgatggtgaaacctcaaaagactta
gacgatgctttgtggatagaacccaatcagtcaggggtgattatttctgtccatattgcc
gatgttaccgctttagttccccctaactcccaactggaacaacaggcattttcacgagtg
gaaacccgttacctggccacaagcaataaccccatgtttccccgtcagttatcggaagat
aaactttctctcctcgaagataaaccccgatggactgttaccattcgcattaccctagat
gaagcggccaatattaaaaaaacccaactcttatctacccatctcaatagcatcaaaaaa
ttttcttatgtaagtgcagataagaccctaaacgacccttcacagcctctgtttcaagtc
ttacgctattgtgaactatgggcgcaaaaactcgctttgaaacggcaaaaaggaggagct
tttggtcaaagtaccatcgctggcgttagtttagacgaggaaggaagattaatcgaaacc
cccttataccattctcaaaaaattattcaagaattcatggttttggctaatactgccgta
gctagtttagccgaagagcatcgactgcccattttataccgtaatcataccgcttcagcc
attgctcctgaaagtaaactgttgattgaaaccttaaacaacctgggactaccagagtta
gtgcgtcagagactacaaagttggttaaaccctgctacttattccccggcgttggttggg
cattttgctatgtctgtgggggcttatacccattttacctcccccattcgtcgcttcgct
gactatattaatcatcgtgtcctcaaagcggtttttattgagcagaaagaatctccctat
accgtagaagaattacaggcgatcgctaaacacattaatgataaaagacaagaaattaaa
gaaaaacgtaacgagcatttccgagaagagcgtctagctaaaaccgttactattttaaac
aaaaaagcaaacattactaccttatcagataaagaattttcccaaatcatcaaagatagt
ctcaaagtttccaagctagataaattagttcccgaagcccaacaacggttagaaaatcgg
actctcaaaccttctgatttatattatttggtatttggggaatatgaaaatcctgacaac
cgaaccttgattaaagatgagttattaaaccatttaaaggaacaacctaccctagcaact
caaatattacaaattgctgccactattggtcaaaccactgtggattatttagacaaaaaa
atgacttcgggtaagtttgctttctggactgtatttgatgaaaaaactaccagtcagccc
tctattgccagtaataaacaaaccgctagacaccaatctaattgcaattggttacaagga
aaattagaagacaaattacaggaagttacggccatcgatcaaactgctttgaacgataaa
ataatagaagaatcccctgtctcagcccctgctactgttgttaatgaagaacccttggac
ttatcaacagtttcctcagaagccatcaataatcctatcgcctatttacacacgaccttg
cagcgattaaagctgaaaaacccagtttattcatacaataaaatagacgatcaatggcga
tgttgttgtcaggttcaatggttagacgaaatactcattgaaacagaagccttgggacaa
aataaaaaagagggaaaaactcaagcttctttaaaagcaatcatcgaattagaaaattat
gtagtcaatgaagaatttccaattgaataa
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