Citrobacter werkmanii: CO701_00250
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Entry
CO701_00250 CDS
T05129
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cwe
Citrobacter werkmanii
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwe03019
]
CO701_00250
Messenger RNA biogenesis [BR:
cwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CO701_00250
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GAPES4
EAL
GGDEF
GDPD
GGDEF_2
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
ATF47695
LinkDB
All DBs
Position
40553..42493
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKFTSRVQAVATAIDTHLVSKDFVT
LTPQIDELMVSVDIVRVELLQGESKVYSHSRTSSYRPAGTNNLYREITVPLLKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTLSIGFIILMLFLSVRWLQRQLSGQELLEIRSTRILNGER
GPNVRGTVYEWPARTSSALDMLLTEIQSAREQRSRLDTLIRSYVAQDTKTGLSNRLFFDN
QLATLLEDQEKVGAHGVVMMVRLPDFTLLRDSWGGDLAEEQISALVNLLSTFIARYPGAL
LARYHRSDFAILLPHRTLKEAESIAGQLLKAVDALPTNKKIDRADMIHIGICVCRSGQSA
EQVMEHAEAATRNSVLQGGNSWSVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
THEGRVHHRELMCRIFDGSEEVISAEYMPMVLQFGLAEEYDRLQISRLILLLGYWPQESL
AIQTTVESLIRPRFQRWLRDTLMQCEKSLRKRIIIELAEADVCQHISRLQPVIRLMDALG
VRIAVTQAGLTLVSTSWIKELNVELLKLHPGLVRNIDKRTENQLLVQSLVEACSGTPTQV
YATGVRSRSEWRTLTERGVAGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcagcttttgtgactttgctcacagggttaacgatcttc
gtgacgctgatcggctgctcgctgagtttctacaatgcgatccaatataagttcactagt
cgtgtccaggccgtcgcgacggcgatcgacacgcacctggtttctaaagattttgtcacc
ttaacgccgcaaatagacgagctgatggtgtcggttgatatcgttcgcgttgagctgctg
cagggggaaagcaaggtttatagccattcccgcaccagcagttatcgcccggcgggaaca
aataatctgtaccgtgagatcaccgtccctttgctcaagcatccggggatgtcgctgcgc
ctggtgtatcaggatccgatgggcaattatttccattcgctgatgaccaccgcaccgctc
acactgtcgattggttttattatcctgatgttatttttgtcggtgcgctggctacagcgc
cagctttccgggcaggaactgttggagattcgttccacgcggatccttaacggtgaacgt
gggccgaatgtgcggggaaccgtgtatgaatggccggcgcgcaccagcagtgcgctcgat
atgctgctcaccgaaattcaaagcgctcgcgagcagcgcagcaggctggatacgcttatc
cgatcgtatgtggcgcaggatacaaaaaccgggctcagcaatcgtctgttttttgacaat
caactggcgacgctgctggaagatcaggagaaagtgggcgcccacggcgtggtaatgatg
gtgcgtttgccggactttacgcttttgcgcgacagttgggggggggatcttgcggaagaa
caaatctcggcgctggtcaatttattatcgacctttattgcgcgttatcctggggcgctg
ttggcgcgctaccaccgtagcgattttgccatcctgctgccgcaccgcaccttgaaagag
gcggaaagcatcgctgggcagttgttaaaagcggtcgatgcccttccgactaacaaaaaa
attgatcgtgccgatatgattcatattggcatttgcgtctgtcgcagcggccagtccgct
gaacaggtgatggagcacgctgaagcggcaacccggaactcggtattacagggcgggaac
agttggtcagtttatgatgactcgctgccggaaaaaggtcggggtaatgtgcgctggcgc
acgctcattgagcagatgctcagtcggggcggtccaaggctctatcagaaacccgcggtc
acccatgaaggacgagtacaccatcgggaattaatgtgccgcatttttgatggcagtgaa
gaggttatctcggcggaatatatgccgatggtgctgcaatttggcctggcggaagaatat
gatcgtttgcagattagccgtctgatcttgttattgggatattggccgcaggaaagtctg
gcgatccagacgacggttgagtcacttattcgaccgcgttttcagcgttggctgcgtgat
accttgatgcagtgcgaaaaatcgctgcgaaaacgcataattattgaacttgctgaggca
gatgtttgtcaacacatcagccggttacagcccgttatccgtttgatggatgcgctgggt
gtccgcattgccgtgacgcaggcggggttgacgctggtgagtaccagctggattaaagaa
ctcaatgtcgagctcttgaagcttcatccaggtctggtgagaaacattgataaacgtacg
gagaaccagctgttggttcagagcctggtggaggcctgctcaggaacgccaacgcaggtg
tatgccactggcgttcgttcgcgtagtgagtggcgtacgctgacagaacgtggagtcgcg
ggtgggcaaggggatttttttgccgcatcacagccacttgacacaaacgtgaaaaaatat
tcgcaaagatactcggtttaa
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