Citrobacter werkmanii: CO701_00715
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Entry
CO701_00715 CDS
T05129
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO701_00715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwe03019
]
CO701_00715
03009 Ribosome biogenesis [BR:
cwe03009
]
CO701_00715
Enzymes [BR:
cwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CO701_00715
Messenger RNA biogenesis [BR:
cwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO701_00715
Ribosome biogenesis [BR:
cwe03009
]
Prokaryotic type
rRNA helicases
CO701_00715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ATF47777
LinkDB
All DBs
Position
136387..138387
Genome browser
AA seq
666 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSKLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNADLLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKMQPEEELDIETLAAALLKMAQGERPLIVPPDAPMRPKREFRDRDERAPRGDRND
RNDRGPRGDRPERGGEDRPKRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSR
YIGNIKLFGTHSTIELPKGMPGDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRGGGGG
RFSGERREGGRGENRGNSTERREGGRGDGRRFSGERREGSRAPRRDDASAPRRDDSAGRR
RFGGDA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaccgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagaccggtagcggcaaaactgcagcgttctccttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcaccgacc
cgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacatatgcacggc
gtgaacgtggtagccctttacggcggccagcgttatgacgtgcagttacgtgccctgcgt
cagggcccgcagatcgtcgtcggtacgccgggtcgtctgctggatcacctgaagcgcggt
accctgaacctctctaaactgagcggtttagtgctggacgaagccgatgaaatgctgcgt
atgggcttcatcgaagacgttgaaacgattatggcgcagatcccggaaggtcatcagacc
gctctgttctctgcaaccatgccggaagcgattcgccgtattacccgccgctttatgaaa
gagccgcaggaagtacgcattcagtccagcgtcaccacgcgtcctgacatcagccagagt
tactggactgtctggggcatgcgtaaaaatgaagcgctggtgcgtttcctggaagcagaa
gattttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaagtggcagaa
gcgctggagcgtagcggctatagcagcgctgcactgaacggcgacatgaaccagtccctg
cgtgagcagactctggaacgtctgaaagacggccgtctggatattctgattgcaaccgac
gttgcggcccgtggtctggacgttgagcgtatcagcctggttgttaactatgacatcccg
atggactccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgctggc
cgtgcgctgctgttcgttgagaaccgtgaacgtcgtctgctgcgtaacatcgaacgcacc
atgaagctgaccattccggaagttgaactgccgaacgcagatctgctgggcaaacgccgt
ctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctggatcagtac
cgtgctctgctggcgaaaatgcagccggaagaagagctggatatcgaaacgctggccgca
gcactgctgaaaatggcacagggtgaacgtccgctgatcgtgccaccagatgcaccgatg
cgtcctaagcgcgaattccgcgaccgtgatgaacgtgctccacgtggcgatcgtaatgat
cgtaacgatcgtggcccgcgtggtgaccgtccggaacgcggtggtgaagaccgtcctaag
cgtgaacgtcgtgacgttggcgatatgcagctgtaccgcattgaagtgggtcgtgatgac
ggtgttgaagtacgtcatatcgttggcgctatcgctaacgaaggtgacatcagcagccgt
tacatcggtaacatcaagctgttcggtacgcactccaccatcgaactgccgaaaggtatg
ccgggcgacgtgctgcagcactttacccgtactcgcatcctgaacaagccgatgaacatg
cagctggttggcgatgcagtaccgcacaccggtggtgagcgtcgtggcggcggcggtggt
cgtttcagcggcgaacgtcgtgaaggtggtcgtggcgaaaaccgtggtaacagcactgag
cgccgtgaaggtggccgtggtgatggtcgtcgtttcagcggcgaacgccgtgaaggcagc
cgtgctccgcgtcgtgacgatgcttccgctccgcgtcgtgatgactccgcaggtcgtcgt
cgtttcggcggtgacgcataa
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