Citrobacter werkmanii: CO701_03235
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Entry
CO701_03235 CDS
T05129
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CO701_03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwe03400
]
CO701_03235
Enzymes [BR:
cwe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CO701_03235
DNA repair and recombination proteins [BR:
cwe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CO701_03235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ATF48227
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All DBs
Position
640207..643752
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AA seq
1181 aa
AA seq
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MNDAAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRETTENPLYARLLDEIADKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLSRDIA
QVVFETWKGPQALLRDIDRYLQGEAPVIKVPPSADETLASRHEKILARINHIKQQWCDSV
DELDGLLEASGIDRRKFNRGNQGKWIEKISAWAQEETQSYQLPDALEKFSQRFLQERTKA
GGITPQHPLFVAIDELLAEPLTIRDLVITRALAEIRETVAAEKRRRGELGFDDMLSRLDA
ALRSESGDALATAIRSRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNGVNTLFSQMTDAFMFREIPFSPVKS
AEKNQSLRFVLNGETQPAINMWLMDGESCGVGDYQNYMARVCATQIRDWLKAGHAGKALL
TSAKTSRPVRASDISVLVRSRQEAALIRDALTQLAIPSVYLSNRDSVFDTLEAQELLWVL
QAVMTPERENTLRSALATSMMGLNAQDIETLNNDEHAWDAVVEEFDGYRQLWHKRGVMPM
LRALMSARQIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQHILEPDS
NASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDRRSFEAVLDL
SQADESIELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAAGLRAAIDALCSDDIACRVPDEPDTERWLSAEESREPLSARTLPRLPGDN
WRVTSYSGLQQRGHGIAQDLIPRLDVDAAGVGEAIVESGLTPHQFPRGASPGTFLHSLFE
ALDFTQPVDPLWVQEQLALGGYDAHWAPVLTPWLEAILYAPLNETGVSLSALSAHEKQVE
MEFYLPISQPLIASQLDALIRQYDPLSAGCPPLDFMQVRGMLKGFIDLVFRHQGRYYLLD
YKSNWLGEDSTAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSEQPQQGIYATRPDAELVALMDEMFAGATLEETL
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccgctgagtcccttgatcctctccgcttgcccctgacgggcgagcgtctg
attgaagcctccgcaggcaccggtaaaacctttaccatcgccgccctgtatttacgttta
ctgcttggactgggcggctctgccgcctttccccgtccgctgaccgtcgaagagttatta
gtggtcacctttaccgaggcggccactgaagaactgcgtggacgtattcgtagcaacatc
catgaactgcgcattgcctgcctgcgtgaaaccaccgaaaacccgctgtacgcccgtctg
ttagatgaaattgccgataaaaagcaggccgcgcagtggctgctgctggctgaacgacag
atggatgaagcggcggtgtttactatccacggtttttgtcagcgcatgctcagtctcaac
gcctttgagtccggcatgttgtttgaacaacagctgattgaagatgaatcactgctgcgt
tatcaggcctgcgcggacttttggcgtcggcattgctacccactgtctcgcgatattgcg
caggtggtttttgaaacgtggaaagggccgcaggcgctgttgagggatatcgatcgctac
ttgcaaggggaagcgccggtcattaaagtgccgccgtcagcagatgaaacgctggcatcc
cgacacgaaaaaatcctcgcacgcatcaaccacatcaagcagcaatggtgcgattcggtt
gatgagctggacggattgctggaagcctccgggatcgacagacgtaaatttaaccggggt
aatcagggcaagtggattgagaagataagcgcctgggcgcaggaagaaacgcaaagttat
cagctgccggatgccctggaaaaattctcccagcgttttctgcaagaacgtaccaaagcg
ggcggcatcacgccacagcatccgctctttgttgccattgatgaactgctcgctgagccg
ctgaccattcgcgatttggtgatcacccgggcactggcggagatccgcgaaacggtggct
gcagaaaaacgccgacgtggtgagctgggttttgacgatatgctcagtcgtctcgatgcg
gcgctgcgcagcgaaagcggcgacgcactggcgacagccatccgtagccgttttccggtg
gcaatgattgatgaattccaggacaccgatccgcagcaatatcgcattttccgccgtatc
tggcagcatcagccggatacggccctgctgctgattggtgacccgaaacaggcgatttac
gcgtttcgcggcgcggatatttttacctacatgaaggcgcgcagcgaagtgagcgcgcac
tacacgctcgacaccaactggcgctcggcacctggcatggttaatggtgtgaatacgctg
tttagccagatgaccgacgcctttatgttccgcgaaatcccctttagtccggtgaaatcc
gccgaaaaaaatcagtcgttgcggtttgtcctgaacggtgaaacacagccagcgatcaac
atgtggttgatggacggggaaagttgcggtgtcggtgactatcagaactatatggcccgg
gtttgtgcgacgcaaattcgtgactggctgaaagccggacacgcgggcaaggcgcttctg
acgagcgctaaaacatcacgaccggtacgcgcgtcggatatcagcgtgctggtgcgcagt
cgccaggaggcggcgctcatccgcgatgcgctgacgcaactggcgatcccgtcggtctat
ctttccaaccgtgacagcgtctttgataccctcgaagcgcaggaactgctgtgggtattg
caggcggtgatgacgccggagcgtgaaaatacgctgcgtagcgcactggcaacgtcgatg
atggggctgaatgcgcaggatatcgaaacgctcaataatgatgagcatgcctgggatgcg
gtggtcgaggagtttgacggctaccgtcagctctggcacaagcgcggcgtgatgccgatg
cttcgcgcgctgatgtcggcgcgtcagattgcggaaaacctgctggcaacggcgggaggc
gagcgtcgcctgactgatattttacacatcagcgagctgctacaggaagccggttcgcag
ttggaaagcgagcatgcgctggtgcgctggttatcccagcatattcttgagccggacagc
aatgcatccagccagcagctcaggctggaaagcgataagcacctggtcaaaatcgtcact
attcacaaatcgaaagggctggaatacccgctggtctggctgcctttcatcactcatttt
cgcgtgcaggatcaggcgttctatcacgatcgccgttcgtttgaagcggtgctggatctc
agccaggctgatgagagcatcgagctggctgaggttgaacgtctggcggaagacctgcgt
ctgctctacgtcgcgctgacccgttcggtatggcactgcagccttggcgttgcgccgctg
gtacgccgccggggagataaaaaaggtgacaccgatgtgcatcaaagcgcgctgggccgt
ctgttgcaaaaaggcgagccgatggacgctgccggactgcgcgccgccattgatgcactt
tgtagtgacgatattgcctgtcgggtccctgatgaaccggacaccgaacgctggctttct
gctgaagaaagccgcgagccgttgagcgcgcggaccttgccgcgcctgccaggcgataac
tggcgcgttaccagttattccggcctgcaacagcgcgggcacggtatcgcgcaggatctg
atcccccggctggacgttgatgcggcgggcgtcggtgaagcgattgtggaatccggactc
acgccgcaccagttcccgcgtggggcgtcaccgggaacatttttgcatagcctgtttgaa
gcgcttgattttacccagccggtggacccgctttgggtgcaggaacaactcgcgcttggc
gggtatgacgcacattgggcgccggttctgaccccgtggctggaggccattttgtatgcg
ccgctcaacgaaactggcgtgagcctgagcgcactttcagcgcatgaaaaacaggtggag
atggagttttatctgccgatttcgcagccgctgattgccagccaactggatgcgttgatc
cgtcagtatgacccgctctcggcgggctgtcctccgctggattttatgcaggtacgcggc
atgctgaaagggtttatcgacctggtgttccgtcatcaggggcgttattacctgctcgac
tacaagtctaactggctgggtgaagacagtacggcgtacacccagcaggcgatggccgct
gccatgcaggcgcatcgctatgatctgcaatatcagctttataccctggcactgcaccgc
tatttacgtcatcgcattgcagactacgactatgaacgtcattttggcggcgtcatctac
ctcttcctgcgcggcgttgacagcgaacaaccgcagcagggtatttacgcgacccgacct
gacgcagaattggtcgctttgatggacgagatgtttgccggtgcgacactggaggagacg
ttatga
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