Citrobacter werkmanii: CO701_12600
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Entry
CO701_12600 CDS
T05129
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CO701_12600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwe03400
]
CO701_12600
Enzymes [BR:
cwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO701_12600
DNA repair and recombination proteins [BR:
cwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CO701_12600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATF49900
LinkDB
All DBs
Position
2508332..2511778
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQHRYTLPAKAGDQRQLGELTGAACATLVADIAEHHAGPVVLIAPDMQNALRLHDEIR
QFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALREQLESAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY
RLDFFDDEIDSLRLFDTDTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
SRFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTESLPKKAANTNLGFQKLPD
LAIQAQQKAPLDALRKFLEAFTGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAVD
AGRYLMIGSAEHGFIDSKRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGITAEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLFNDVENIQKTADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKEGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKGENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPVWLIGLLQKQPQHFRLDGPTRLKFIQDLADRKTRMEWVRQFMR
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacatcgttacacgctcccggcaaaagccggcgatcagcgccagttaggt
gaacttaccggtgctgcctgcgccacgctggtggcagacattgccgaacaccacgccggc
cccgtggtactcatcgcaccggatatgcaaaatgccctgcgcctgcatgacgaaattcgc
cagtttaccgaccagatggtgatgaacctcgcggactgggaaacgctcccgtacgacagt
ttttctccacatcaggaaatcatctcctcgcggctctccacgctatatcaactgccttct
atgcagcgcggcgtgctgatcgtgccggtcaacacgctgatgcaacgtgtgtgcccacac
agctatctgcacggtcacgcgctggtgatgaaaaaaggtcagcgtttatcgcgtgacgcc
ctgcgtgagcaactggaaagtgccggttatcgccacgttgatcaggtcatggaacacggt
gaatatgccacacgcggtgcgctgctggacctgttcccgatgggcagcgaactgccttac
cgtcttgatttctttgatgatgaaattgacagtttgcgtctgtttgataccgatacccaa
cgcactctggaagaagtcgacgctattaatctgctacccgcacacgaattccccaccgat
aaaacggccatcgaactgttccgcagtcagtggcgcgacacctttgaggtgaaacgcgac
gctgaacatatttatcagcaggtcagtaaaggcacgctgcctgccgggatcgaatactgg
cagccgctgtttttcagcgagccgttgccgccgctattcagctacttcccggccaataca
ctgctggtgaataccggcgacctggaaaccagcgccgagcgctttcaggccgacacgctg
tcgcgctttgagaatcggggcgttgacccgatgcgtccacttctgccgccggaatcactg
tggctgcgggtggatgagctgttctctgaacttaaacgctggccccgcgttcagctgaaa
accgagagcctgccgaaaaaagcggcgaataccaacctcgggttccagaagctgccagac
ctggccatccaggcgcagcaaaaagcgccgttggatgcattacgtaagttccttgaagcc
tttaccggtccggtgattttctcggtagaaagtgaaggccgtcgtgaagctctcggtgaa
ctgctcgcccgtatcaagattgcgccgaagcgcattttgcgcctcgatgaagcggtcgat
gccggtcgttatctgatgattggctcggcggaacacgggtttattgatagcaaacgaaat
ctggcgctgatctgcgaaagcgatctcctcggcgagcgcgtggcgcgccgtcgtcaggat
tcgcgtcgcaccatcaaccccgataccttaatccgcaacctggcggagttgcaccccggt
cagccggtggtgcatctggagcacggcgtggggcgctacgccggcatgaccacgctggaa
gcaggcggtatcaccgctgaatacctgatgctcacctacgccaacgacgccaaactgtat
gtacccgtgtcgtcattacacttaatcagccgttacgccggtggtgcagaagaaaatgcg
ccgctgcataaactcggcggtgacgcctggtcacgtgcgcggcagaaagccgccgagaaa
gtgcgcgatgtggcagcagagctgctggacatctacgcccagcgtgcggcgaaagaaggc
tttgcctttaagcatgaccgcgaacagtaccagctgttttgcgacagcttcccgtttgaa
accacgcccgatcaggcgcaggccattaacgcggtactcagcgatatgtgtcagccgctg
gcgatggatcgactagtctgcggcgacgttggcttcggtaaaaccgaagtagcgatgcgc
gccgccttcctcgccgtcgagaaccacaaacaggtcgccgtactggtaccgaccaccctg
cttgctcaacagcacttcgacaacttccgtgaccgctttgccaactggccggtacgcatt
gagatgttgtcgcgttttcgtagcgccaaagagcaagcgcagatcctggagcaggtcgct
gaaggtaaaatcgatattcttatcggtactcacaaactgctacaaagcgatgtgaagcta
aaagatttaggtctgctgatcgtcgatgaagagcaccgcttcggcgtgcggcataaagaa
cgaatcaaagcgatgcgcgctgacgtggatattctgacgctaaccgcaacgccgatccct
cgcacgctgaatatggcgatgagcggtatgcgcgatctgtcgatcattgccacgccgccc
gcccgccgtctggcggtcaaaacctttgtgcgcgagtatgacaatctggtggtacgcgaa
gccattctgcgtgaagtgctgcgtggtggtcaggtctattatctgttcaacgacgttgag
aacatccagaaaactgccgacaggctggcagaactggtgccggaagcgcgtattgccatc
gggcatggacagatgcgcgagcgcgagctggaacgcgtgatgaacgatttccaccaccag
cgatttaacgtgctggtgtgtaccaccattatcgaaaccgggatcgacattccgactgcc
aacacgattatcatcgaacgtgcggaccacttcggtctggcgcagctgcatcagctacgt
ggtcgcgtgggacgctcgcatcaccaggcctacgcctggctgctgacaccgcacccgaaa
gccatgaccaccgacgcacaaaaacgcctcgaagccattgcctcactggaagatttgggt
gcaggttttgcgctggcgacccacgacctcgagattcgcggggcaggcgaactgctgggt
gaagaccagagcggctcaatggaaaccatcggtttctcgctgtatatggagctgctggag
aacgcggtggatgcgctcaaagaagggcgtgaaccgtcgctggaagatctcaccagtcaa
caaaccgaagtggaactgcgcatgccgtcgctgttgccggatgatttcattcccgatgtg
aacacgcgactgtcattctataaacgcattgccagtgcaaagggtgaaaatgaactggaa
gagatcaaggtcgagctaatcgaccgctttggcctgctgcccgatcctgcccgcacgctg
ctggatattgcccgtctacgccagcaggcgcaaaagctgggtatcagaaagctcgagggt
aatgaaaaaggcggtaccattgaatttgcagagaaaaaccacgtcaacccagtgtggctg
atcggtttgctgcaaaaacaaccacagcacttccgcctggacggtcccacgcgcctgaag
tttattcaggaccttgctgaccgtaaaacgcgtatggagtgggtgcgtcagtttatgcgc
caactggaagaaaacgccgtagcatag
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