Citrobacter werkmanii: CO701_19585
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Entry
CO701_19585 CDS
T05129
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO701_19585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwe03019
]
CO701_19585
03016 Transfer RNA biogenesis [BR:
cwe03016
]
CO701_19585
Enzymes [BR:
cwe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CO701_19585
Messenger RNA biogenesis [BR:
cwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CO701_19585
Transfer RNA biogenesis [BR:
cwe03016
]
Prokaryotic type
tRNA degradation factors
CO701_19585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
MetOD2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ATF51162
LinkDB
All DBs
Position
complement(3948550..3951012)
Genome browser
AA seq
820 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAVELNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPDA
VVKQVAGLKEEVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDEELREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTAREKAKKGDTGKSTGRRRQAGKKVNFEPDSAFRGEKKGKAKPQ
ADKKTAEKKGDKKAKKPSTKTLKIAAATKAKRAAKKNVAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagcagaaaaatacgcgaatcccatcccgagc
cgggaatttatcctcgaacatttaactaaacgtgaaaaaccggccaaccgcgatgagctg
gccgttgaactcaacattgaaggcgaagagcagctcgaagcgcttcgtcgccgcctgcgc
gcgatggagcgtgatgggcaactggtcttcacccgccggcagtgttacgcactgccggag
cgtcttgacctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgc
gtcgaaggacgtaaagacgatctgtatctctccagtgagcagatgaaaacctgcatccat
ggcgatcaggtactggcgcaaccgctgggcgcggatcgtaaaggccgccgcgaagcgcgt
attgtgcgtgtactggtgccgaaaaccagtcagattgtcggtcgttactttaccgatgcg
ggcgtaggttttgtcgttccggacgacagccgtctcagctttgatatcctgatcccacca
gaagaggtgatgggcgcccgcatgggctttgtggtggtggttgaactgacccagcgccca
actcgtcgcactaaagcagtgggtaaaattgttgaagtgctgggtgacaacatgggtacc
agcatggccgttgatatggccctgcgtacgcacgaaatcccttatatctggcctgatgca
gtcgttaaacaggtcgccgggctgaaagaagaagtaccggaagaggccaaaatcggtcgt
gttgacctgcgtgatttgccgttggtgacaattgatggtgaggatgcgcgtgactttgat
gacgcagtctactgtgagaagaaacgcggcggtggctggcgtttgtgggttgctatcgct
gacgtcagttattacgtgcgtccgcctaccccgctggaccaggaagcgcgcagccgcggg
acttccgtctacttcccgtcgcaggttgtaccgatgctaccggaagtcctttccaacggg
ttatgctcgctgaacccgcaggtagacaggctgtgcatggtttgtgagatgaccatctcc
acgaaagggcgtctgacgggctacaaattctatgaagcggtgatgagctcccacgcgcgt
ttgacctacaccaaggtctggcacatgctgcagggtgatgaggaactgcgtgagcaatac
gcaccgttggtgaaacacattgaagagctgcacaatctctacaaagtgttggataaagcc
cgtgaagagcgcggtggtatctcgtttgagagcgaagaagcgaagtttatcttcaatgcc
gaacgccgtattgaacgcattgagcagactcagcgtaacgacgcacacaagctgatcgaa
gagtgcatgatcctggcgaacatctcagcggcacgttttgttgagaaagccaaagagccg
gcactgttccgtatccatgacaagccgacgactgaagcgattacctccttccgttccgtg
ctggcggagttgggactggagctgccgggcggtaacaaacccgagccgcgcgattacgcc
gagttgttggagtcgattgccgatcgacctgacgcagaaatgctgcaaactatgctgctg
cgctcgatgaagcaggcgatttacgatcccgaaaatcgcggtcactttggtctggcgctg
cagtcttatgcccactttacctcgccgatccgtcgttacccggacctctctttgcaccgt
gcgatcaagtatctgctggcgcaggagcagggccacaaaggcaataccacggaaaccggt
ggctaccactattcgatggaagagatgctgcaactgggtcagcactgttctatggcagaa
cgtcgtgctgatgaagctacgcgcgatgtatctgactggctgaagtgtgacttcatgctg
gatcaggtcggtaatgtctttaagggcgtcattgccagtgtgaccggttttggcttcttt
gtccgcctggatgaactgtttattgacggcctggtgcatgtctcctcgctggataacgac
tactatcgcttcgatcaggttgggcaacgcctgaccggtgaatcaagcggtcagatgtat
cgcctgggcgatcgcgtcgaagtgcgtgtggaagccgtcaacatggacgagcgtaaaatc
gactttagcctgatctccagcgaacgtgccccgcgcaacgagggtaaaactgcgcgtgaa
aaggcgaagaaaggcgatacgggtaaaagcaccggccgacgtcgtcaggcgggaaaaaag
gtgaatttcgagccggatagcgcattccgcggcgagaaaaaaggcaaagctaaacctcag
gcggataaaaaaacggctgagaaaaaaggcgataaaaaagcgaaaaagccctcgacaaaa
acgcttaaaatcgcggccgccaccaaagccaaacgcgcggcgaaaaagaacgtcgcgcaa
taa
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