Citrobacter werkmanii: CO701_20750
Help
Entry
CO701_20750 CDS
T05129
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CO701_20750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cwe03021
]
CO701_20750 (rpoC)
03400 DNA repair and recombination proteins [BR:
cwe03400
]
CO701_20750 (rpoC)
Enzymes [BR:
cwe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CO701_20750 (rpoC)
Transcription machinery [BR:
cwe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CO701_20750 (rpoC)
DNA repair and recombination proteins [BR:
cwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CO701_20750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
ATF51370
LinkDB
All DBs
Position
complement(4193652..4197875)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSIKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVTGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGIQISAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIDSAGSSDFLEGEQVEYSRVKIANRDLEANGKVAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVTAEDASASLAELLNAGLGGSNND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atatttgggccagtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcgtctccgactgcgcacatctggttcctgaaatcactg
ccgtcccgtatcggtctgttgctcgatatgccgctgcgtgatatcgaacgcgtactgtac
ttcgaatcatatgttgttatcgaaggcggtatgaccaatctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaagcgt
atcaaactgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttt
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgacgccctgttggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccattaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
ggcgaattcgttgcgcataccagcattaaagacacgaccgttggccgtgctattttgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggtaagaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttatcttc
gctgaccagaccatgtacaccggctttgcctatgcagcgcgctcaggcgcatctgttggt
attgacgacatggttatcccagagaagaaatacgagatcatctcagaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaaccgaaactgttattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcaaactccggttatctgacacgtcgtctg
gttgacgtcgcgcaggatctggttgtgactgaagatgactgcggcaccctggaaggcatc
accatgaccccggttatcgagggtggtgacgttaaagagccgctgcgcgatcgcgtattg
ggtcgtgtgactgctgaagacgttctgaagccgggcaccgcggatattctggttccacgc
aacacgctgctgcacgagcactggtgtgacctgctggaagagaactctgttgactccgtc
aaagtacgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaatgcgaagtcggttgtgaactctgccggtaaactggtagtgacctcgcgtaacacc
gagctgaaactgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggt
gctgttatggcgaaaggcgatggcgaacaggttactggcggcgaaaccgtagcaaactgg
gatccgcataccatgcctgtcatcactgaagtaagtggtttcatccgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttctctggtg
gttctggattctgcagagcgtactgcaggtggtaaagacctgcgtccggcactgaaaatt
gttgatgctaacggtaacgacgttctgatcccaggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcaatcgtccagctggaagatggtatccagatcagtgcgggtgatgct
ctggcgcgtattcctcaggaatcaagcggtaccaaggacatcaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagagcccgctatccttgcggaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccgtta
gacggcagcgaaccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatc
ctgcgtcttcgtggcgtacacgcggtaacgcgttacatcaccaacgaagttcaggacgtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagcgaccattgacagtgctggtagctccgacttcctggaaggcgaacaggtt
gaatactcccgcgtcaagattgctaaccgcgatctggaagcgaacggcaaagttgcggca
acttactctcgcgacctgctgggtatcaccaaagcgtctctggcaaccgaatcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgatccctgccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgcagcgggcgaacagccggca
gcgcctcaggttactgcggaagatgcgtctgccagcctggcagaactgctgaacgcaggt
ctgggcggttctaacaacgattaa
DBGET
integrated database retrieval system
