Citrobacter werkmanii: CO701_21655
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Entry
CO701_21655 CDS
T05129
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cwe
Citrobacter werkmanii
Pathway
cwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO701_21655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwe03019
]
CO701_21655
03400 DNA repair and recombination proteins [BR:
cwe03400
]
CO701_21655
Enzymes [BR:
cwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO701_21655
Messenger RNA biogenesis [BR:
cwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO701_21655
DNA repair and recombination proteins [BR:
cwe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CO701_21655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ATF51523
LinkDB
All DBs
Position
complement(4383042..4384871)
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AA seq
609 aa
AA seq
DB search
MAQAEVLNLEMGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLY
IAPERLMLDNFLDNLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFVAL
TATADDTTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAGAYHAGLDNSVRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQL
LDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIREMAHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPILRGVVPLQLAVPRIVALKPRAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSPSEMLSVNGVGMRKLERFGKEFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaaatgggcgctaaacaggttttgcaggaaacc
tttggctaccaacagtttcgccctggtcaggaagaaatcatcgataccgtgctctctggc
cgcgactgcctggtcgttatgccaaccggtggtggtaaatccctttgttatcaaattccc
gcattattgctgaatggcctcaccgtggttgtctcgccgctgatttccctgatgaaagac
caggtcgatcagctgctggcaaacggtgtggcggcggcatgcctgaactccacccagagc
cgtgaacagcagcaagaggtgatggcaggctgccgtagcgggcaaatccgcctgctgtac
attgcgcccgagcgcctgatgctggataacttccttgataatctggcgcactggaatccg
gtactgctggcggtagatgaagcgcactgtatttcccagtgggggcatgatttccgcccg
gaatatgccgcgctgggtcagctgcgtcagcgtttccctgcgctgccgtttgtggcgctc
acggccaccgccgatgacaccacccggctggatattgtgcgtctgctcgggcttaacgat
cccctcattcagatcagcagctttgaccgtcccaatatccgctacatgctgatggagaag
tttaagccgctcgatcagctgatgcgctacgtgcaggaacaacgcggaaagtccggcatt
atttactgtaacagccgcgcgaaggttgaagacaccgcggcgcgtctgcaaagccgcggg
atcagcgccggagcctatcatgccgggttggacaacagcgtgcgcgccgacgtgcaggag
aaattccagcgcgacgacctgcaaatcgttgtcgcgaccgtggcgtttggcatgggaatt
aacaaacccaacgtgcgcttcgtggtgcattttgatatcccgcgtaatatcgagtcctac
tatcaggaaaccgggcgtgccgggcgagatggcctgcccgcagaagcgatgctgttttac
gatccggccgatatggcgtggctccgccgttgtctcgaagagaaacccgccggacaactg
ctggatatcgagcgtcacaagctcaacgcgatgggggcctttgccgaggcgcaaacctgt
cgccgtctggtgctattgaactattttggcgaagggcgtcaggagccgtgcggcaactgc
gatatttgtctcgatccgccaaaacagtacgacggcttaatggatgcgcgtaaagcgctg
tcgacgatctaccgcgttaaccaacgttttggtatgggctatgtcgtcgaggttctgcgc
ggggcaaataaccagcgcattcgtgagatggcgcatgacaagctgccggtctatggtatt
ggtcgtgagcagagccatgaacactgggtgagcgtcattcgtcagctgattcacctcggg
ctggtgacgcagaatattgcccagcattccgcattacaactcaccgaagctgcgcgcccg
atcctgcgtggcgttgtgccgctacagcttgccgtgccgcgtattgtggcgcttaaaccg
cgcgcaatgcagaaatcctttggcggtaactacgatcgtaagctgtttgccaaactgcgt
aagctgcgtaaagccattgccgatgaagagaatatcccgccgtatgtggtctttaacgac
gccacgctgattgaaatggccgagcaaatgccggtgtcaccgagcgaaatgctgagcgtc
aacggcgtgggaatgcgtaaacttgagcgttttggcaaagagtttatggcacttatccgc
gcacatgttgatggtgacgacgaagagtag
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