Chryseobacterium wangxinyae: PGH12_09715
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Entry
PGH12_09715 CDS
T11581
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
Organism
cwg Chryseobacterium wangxinyae
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WBZ93763
LinkDB
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Position
complement(2116589..2120410)
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AA seq
1273 aa
AA seq
DB search
MSKTTAVTKGNERINFSTAKGKIITPDFLDIQLESFKDFFQLDTLPEDRRKEGLHKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGFESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLSLNIPTTTEVLTKEDIIAIVRHLIELVNSKTDVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINTLGFIETPYRKVEGSTVDLHADPIYLNAEDEEDKVIAQANVELDDNGAFLTDRII
ARLDGDYPVVEPSQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVAKDSRILINAEGRGIVEYVDADQITIKYERSDDEDLVSFESATKTYK
LTKFRKTNQSTTITLRPNVRVGETVEKGQVLCDGYATENGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVTNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGADWTVDNDKNELIKQLIHNYKIKFNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGMTFATPIFDGATLDQITEYTEKAGVPTFG
HTHLYDGGTGERFTQAATVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGEAMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagcagttactaaaggaaatgagagaatcaatttctctacagcgaaa
ggaaaaatcattactccggatttcttagatatccaattagagtcatttaaagattttttc
cagctagatacacttccggaagacagaaggaaagaaggtttgcataaaaccttccaggaa
aactttccaattaccgattctagaaaccaattcgttttggaattcttagattatttggta
gattctccacgttattcgatcgacgaatgtgtggaaagaggtttaacgtattcagttcct
ctaaaagctagacttaaattgtattgtactgaccctgaacatgaagattttcagaccgtt
gtacaggatgtttatttaggtccggttccttatatgactccgtctggttcatttattatt
aatggagcagagcgtgttattgtaactcagttacacagatctccgggtgtattcttcgga
cagacatatcacgcaaacggaacaaaattgtactattcaagaatcattccttttaaagga
tcttggatggaatttactaccgatatcaacagcgtaatgtacgcgtatatcgaccgtaag
aaaaaattacctttaactacattattaagagcgatcggttttgaatctgataaagacatt
cttcagatctttgaccttgcagaagaagtgaaagtttctaaagcggcgcttaaaaaagta
gaaggtagaactttggctgcgagagtattgaacacttggttcgaagatttcgtagacgaa
gacactggagaagttgtttctatcgaaagaaacgaaatcatcttagatagagaaacgatt
cttgaaaaagaacatttagatcttattttggatgcaggtgtgaaatctatcttgattcac
aaagaaaattcaaatgaattctctatcattcagaatactttgcaaaaagatccaaccaac
tcagaaaaagaagcggttgaatatatttaccgtcagttaagaaatgcagatccacccgat
gaggaaactgcaagaggaattattgaaaaattattcttctctgagcaaagatattcactt
ggtgaagtaggacgttacagactaaacaaaaagttaagcctaaatatcccaactacaact
gaagttcttacaaaagaagatatcattgcgattgtaagacatttaattgagttagtaaac
tcaaaaactgatgtcgatgatattgaccacttatcaaacagaagaattaaaactgttggt
gagcaattagcaggacagttcggcgtaggtctttctagaattgcaagaacaattaaggaa
agaatgaacgttagagataacgaaatctttactccgcttgatctagtaaatgcgaagact
ttaacatcagttattaactcattctttggtaccaaccagctttctcagttcatggaccaa
accaatcctctatcagaaatcacgcacaagcgtagactttctgccctgggacctggtggt
ttatcaagagaaagagcaggtttcgaggtacgtgacgttcaccatactcactatggtcgt
atctgtcctatcgaaactcctgagggaccaaacattggtttgatctcttctttaggtatc
tatgctaaaatcaatactttaggtttcattgaaactccatatagaaaagtagaaggtagt
actgtagatctacatgctgatcctatttatctgaatgcagaagacgaagaagataaagta
attgctcaggcaaacgttgagttagatgataacggagcgttcttaacagacagaattatt
gccagattagatggtgattatccagttgttgagccttctcaggttaatttgatcgacgtt
gcaccaaaccagatttccggtatttcagcttcattgattccattcttggagcatgatgat
gcgaaccgtgcattgatgggatcaaacatgatgcgtcaggcagttcctttgttgaagcca
caagctccaatcgtaggtacaggtctggaacaacaagttgcaaaagattctagaattttg
atcaacgctgaaggtagaggtatcgtagagtatgttgatgctgatcagattacgattaaa
tatgaaagaagcgatgacgaagatctagtatcattcgaatctgctacgaaaacatataaa
ctgactaagttcagaaaaactaaccagagtacgacaattaccctaagaccaaatgtaaga
gtaggtgaaacagtggaaaaaggtcaggttctttgtgacggttatgcaaccgaaaacgga
gaattggctcttggtagaaacttagtggtagccttcatgccttggaaaggatacaacttt
gaggatgcaattgtaatcaacgaaaaagttgtacgtgaagactggtttacttcaatccac
gtggatgagtattctcttgaagttcgtgataccaaattaggtatggaagaattgacggca
gatattccaaacgtttctgaagaagctacaaaagatcttgatgagaacggaatgatcaga
attggtgctgaggtgaagcctggcgacattatgatcggtaagatcactccaaaaggtgaa
tctgatcctactcctgaagagaaacttctaagagcaatctttggtgacaaagccggtgat
gtaaaagatgcttcattgaaagcagattcttcattaagaggtgttgtgatcaataaaaaa
ttgttctctagaaacattaaagataaaaagaaaagaactgaagaaaaacttaaacttgaa
gagattgaaaacacttacaaggctaagtttgacgagttgagaaatactttaatcgaaaaa
ttaaacactctagttagcggtaaaacttctcagggagttacgaatgacttagatgaagaa
attatcggtaaaggggtgaaatttactcacaaattattgacttcagttgaagattacgta
aacgttagcggtgcagactggacggttgataacgataagaatgaattgatcaaacaattg
attcacaactacaaaatcaaattcaacgatattcaaggagttaaaaaccgtgagaaattc
gcaatttctatcggagatgagcttcctgcagggatcatgaaattggctaaagtatatatc
gctaaaaaacgtaaactaaacgttggagataaaatggcgggtcgtcacggtaacaaaggg
atcgtttcgagaatcgttcgtgaggaagatatgccattcttggaagacggaacaccggta
gatatcgtattgaatccacttggggtaccttctcgtatgaacatcggacagatttatgaa
acagttcttggatgggcgggtcagaaattggggatgacgttcgctacgccaatctttgat
ggggcaactcttgatcagattacagagtacactgaaaaagctggagttcctacatttggt
cacactcacctttatgatggtggtaccggagaaagatttacacaggctgcgactgtaggt
attatctatatgttgaaacttggacacatggtagatgacaaaatgcacgcacgttctatc
gggccttactcattgattactcagcagccattaggaggtaaagctcagtttggtggtcag
agattcggagagatggaggtttgggctctagaagcatttggagcatcaaatatcctgaga
gaaatcttgactgtgaagtctgatgacgtgattggtagagcaaaaacttatgaagcgatt
gcgaaaggagaagcaatgcctgaaccaggtattccggaatctttcaacgtattacttcac
gagttacaaggtcttggattagacgtaagactagaggaataa
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