Corynebacterium wankanglinii: IA203_04870
Help
Entry
IA203_04870 CDS
T08053
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cwk
Corynebacterium wankanglinii
Pathway
cwk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cwk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IA203_04870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cwk03400
]
IA203_04870
Enzymes [BR:
cwk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IA203_04870
DNA repair and recombination proteins [BR:
cwk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IA203_04870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNP94798
LinkDB
All DBs
Position
959619..961922
Genome browser
AA seq
767 aa
AA seq
DB search
MANDQKVRVGGRELTVSNLDKVIYPATGTTKADVVRYYQAVAGVLVPQAKRRPVTRKRWP
EGVEKQSFFRKDLEDFAPEWIPTATIQHTTSVNAYPLIDGSATLAWLAQVAALELHTPQW
RFGADGKPQHPDRLVLDLDPGPGVELAATAEVAAWCREILEDMGLTCVPVTSGSKGIHLY
AGLDGTSDADAVTKVAKTLAQHLERAHPDRVTATMAKAERKGRVFLDWSQNNGKKTTICP
YSLRGRERPTVAAPRTWEEIQDPGLRQLEFEEVIARVERGLDPIAVLGAPGEDRLATYRS
MRDKDKTGEPVPDAAPSPREGAPIFVIGEHDASHLHWDFRLEHDRVLVSWAVPKGPPLET
DVNRLAVQTEDHPVEYAEFEGTIPKGQYGAGTVKIWDIGTCEIEKWRDREIIAVLHGREG
GGLGGIPRRFALIRTDERNWLLKLTRDQPSAPVPSVPTVPPVSLSPMLPTTATRGDVALE
QQDGATFAFEMKWDGYRILADVDGKVRLRSRSGKDYTHLFPHLGELEHVLHDGGTVDGEL
VALSPDGRPDFSLLHKADENGIEADLRYMVFDLLRLGERDLTAETWETRRRLLEELNATE
HVAIPPAYRGAFDHAWGAAEQLGLEGVVAKRTDSPYEPGQRSTAWLKIKRALHQEVVVVG
VRTGKRGIASLLVAVPDAEGELRYAGRVGTGFSNAQLADIGTKLRRVQRKTPPVEVPTRD
ATDAWWVTPKYVAEVQLAGATADKKVRQASWRGWRDDKDPSEVRWEV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgaccagaaggtccgcgtcggcggccgtgagctcaccgtgagcaacttagac
aaggtgatttacccagccaccggcaccacaaaggccgacgtcgtgcgctactaccaggcg
gtggcaggcgtgctcgtcccacaggcaaagcggcggccggtgacgaggaagcggtggccg
gaaggcgtcgagaagcaaagcttcttccgcaaagacctggaggattttgcgcccgagtgg
atccccacggccaccatccagcacaccaccagcgtcaacgcgtacccgcttatcgacggc
tccgccaccctcgcgtggcttgcccaagtcgcggccttagagctgcacaccccgcagtgg
cgcttcggcgcggacggcaaaccccaacacccggatcgcctggtgctggacctggaccca
ggccccggcgtcgagctcgcagccaccgctgaggtggcggcgtggtgccgcgaaatcctc
gaagacatggggctgacctgtgtgcccgtgacctccggctcgaagggtatccacctctac
gcgggactggacggcaccagcgacgccgacgcggtgaccaaagtggccaaaaccctggcc
cagcacctggagcgggcccacccggaccgggtcaccgccaccatggcgaaagcggagcgc
aagggcagggtctttttggactggagccaaaacaacgggaagaagaccactatctgcccc
tactcgctgcgcggccgcgaacgccctaccgtggccgcgccgcgcacgtgggaggaaatc
caggacccggggctgcgccagctcgagttcgaggaggtcatcgcccgcgtcgagcgcggc
ctcgacccgatcgccgtgctgggcgcgccgggcgaggaccggctggccacctaccgctcg
atgcgcgacaaggacaaaaccggcgagcccgtgccggacgccgcaccaagcccgcgggaa
ggcgcgcccatcttcgtcatcggcgagcacgacgcgtcccacctgcactgggatttccgc
ctcgagcacgatcgcgtgctggtgtcctgggcggtaccgaagggcccgccactggaaacg
gacgtgaaccgtctggcagtgcagaccgaggaccacccagtcgaatacgccgaattcgag
ggcaccattcccaaaggccagtacggcgcggggacggtaaagatctgggacatcggcacc
tgcgagattgagaaatggcgcgaccgggaaatcatcgccgtgctccacggccgcgagggc
ggcggtttaggcggcatcccgcgccgcttcgcgctgatccgcaccgacgagcgaaactgg
ctgctcaaactcacacgcgaccagccgagcgcgcccgtgccgtccgtgccgaccgtgccg
cctgtgtcactgtcgcccatgcttcccaccacggccacccgcggcgacgtggccctcgag
cagcaggatggcgccacgttcgcattcgagatgaagtgggacggctaccgcatcctcgcg
gacgtagacggaaaggtccgcctgcgcagccggagcggcaaggactacacccacctgttt
ccgcacctcggggagctcgagcacgtgcttcacgacggcggtaccgtcgacggggaactc
gtcgccctcagccccgacggcaggccggacttctccctactgcacaaggccgacgaaaac
ggcatcgaggcggacctgcgctacatggtgttcgacctgctgcgcctgggggagcgagac
ctcacggccgagacctgggagacccgccgcaggttgctggaggagcttaatgcaaccgag
cacgtggccatcccgcccgcctaccgcggtgccttcgaccacgcctggggcgcggccgag
cagctggggctcgagggcgtggtggccaagcgcaccgactcgccgtacgagccggggcag
cgcagcaccgcatggctcaagatcaaacgcgccctccaccaggaagtagtcgtagtcggc
gtgcgcacgggcaagcggggcatagcctcgctcctcgttgcggtcccggatgccgaaggc
gagctgcgctacgcgggccgcgtgggcacgggcttttccaacgcgcagctcgcggacatc
ggcacgaagctgcgacgggtgcagcgaaagaccccgccggtggaggttcccacccgcgac
gcgaccgacgcctggtgggtcaccccgaagtacgtggccgaggtgcagctcgcgggcgct
accgcagacaaaaaagtgcgccaggcctcgtggcgaggctggcgcgatgacaaagacccc
agcgaggtgcgctgggaggtctag
DBGET
integrated database retrieval system
