Conexibacter woesei: Cwoe_4583
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Entry
Cwoe_4583 CDS
T01153
Name
(GenBank) Exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cwo
Conexibacter woesei
Pathway
cwo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cwo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cwoe_4583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cwo03019
]
Cwoe_4583
03016 Transfer RNA biogenesis [BR:
cwo03016
]
Cwoe_4583
Enzymes [BR:
cwo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Cwoe_4583
Messenger RNA biogenesis [BR:
cwo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cwoe_4583
Transfer RNA biogenesis [BR:
cwo03016
]
Prokaryotic type
tRNA degradation factors
Cwoe_4583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADB52996
UniProt:
D3F901
LinkDB
All DBs
Position
complement(4885591..4887396)
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AA seq
601 aa
AA seq
DB search
MSRRDYRGRGRARDEDRTLPRERARDRERDRPLPRTDVVAVLEKRGRHLVGEPYFQRGPR
LIVDRDRRASLGDLVLLRAGQRGKGHAKVVRRIGRPDVARDVIEALMLDRGLRRRFDPAV
ERAAREPRAVDVPGRRDLRDLTTFTIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAY
VRPGDLIDREAYRRGTSVYVPAKVEPMLPEGLSNVACSLRPGEDRLAVTAELELHGPSVA
RASFYRSTIRSDERLDYDRVDRIFAGAEPALEPWAQPLAAARGAAAALAARRDAQGALAI
ESVEPEFAFDREGHVTAAAGVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERP
DGSAAERLIAQLASLGVPTPPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLV
LRALKQARYDPRNLGHTGLGLTHYCHFTSPIRRYPDLVCHRALLSAVGAGEDAPQASRLP
GAGDWASARERDAMQVERAADDVARCFLLERTLFETGFDQDFDGEVTGVIGAGAFVAFGD
GYEGMLPVRKLHGEWWELNEEGTILNGTRTGKAIRIGDAVRVQVDRVDAPRGRVDLFPVE
L
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggcgcgactatcgcgggcgggggagagcgcgcgacgaggaccgtacgctcccg
cgcgagcgggcgcgcgaccgcgagcgtgaccggccgctgccgcgcaccgacgtcgtcgcg
gtgctggagaagcgcggccgccacctcgtcggcgagccgtacttccagcgcggcccgcgg
ctgatcgtcgacagagaccgcagagcgtcgctcggcgacctcgtgctgctgcgggcaggg
cagcgcggcaagggccacgcgaaggtcgtgcgccgcatcggccggcccgacgtcgcgcgc
gacgtgatcgaggcgctgatgctcgaccgcggcctcagacgccgcttcgacccggccgtc
gagcgagccgcgcgcgagccgcgcgccgtcgacgtcccgggccgccgcgacctgcgcgac
ctgacgacgttcacgatcgatccggccaccgcgaaggacttcgacgacgcgatctcggcc
gagcagacgggccccgaccgctggcggatctgggtccacatcgccgacgtctccgcctac
gtgcgccccggcgacctgatcgaccgcgaggcgtatcggcgcggcacgagcgtctacgtt
cccgcgaaggtcgagccgatgctgcccgaagggctctcgaacgtcgcctgctcgctgcgg
ccgggcgaggaccggctcgccgtcacggccgagctggagctgcatgggccgagcgtggcg
cgcgcctcgttctaccgctcgacgatccgctccgacgagcggctggactacgaccgcgtc
gatcggatcttcgccggcgccgagccggcgctggagccgtgggcgcagccactcgccgcc
gcgcgcggggcggccgcggcgctcgccgcgcgccgggatgcgcagggcgcgctggcgatc
gagagcgtcgagccggagttcgcgttcgaccgcgagggccacgtgacggccgccgccggc
gtcgtgcagacggagtcccaccggctgatcgagcacctgatgatcctcgccaacgagcag
gtcgcgcggctgctgtccgagcgcaaggtgccgaccctgtaccgcgtccacgagcggccc
gacggcagcgcggcggagcggctgatcgcgcagctcgcctcgctcggcgtgccgacgccg
ccactgcccgagcagccgacgccgcagcagggagcggaggcgatcgcggtcgcttcgcat
ctcgtcgcggcctacgtcagacgctccagacgcggcgggatcggcctcaacagcctcgtc
ctgcgcgcgctcaagcaggcccgctacgacccgcgcaacctcggtcacaccggcctcggc
ctgacccactactgccacttcacgtcgccgatccggcgctatccagacctcgtctgccac
cgcgcgctgctgtcggcggtcggcgcgggggaggacgcgccgcaggcgtcgcggctgccg
ggcgcgggcgactgggcctcggcgcgcgagcgtgacgcgatgcaggtcgagcgcgccgcc
gacgacgtcgcgcgctgcttcctgctcgagagaacgctgttcgagaccggcttcgaccag
gacttcgacggtgaggtgaccggcgtgatcggcgccggcgcgttcgtcgcgttcggcgac
ggctacgaggggatgctgcccgtccgcaagctgcacggcgagtggtgggagctgaacgag
gagggcacgatcctcaacggcacgcggacgggcaaggcgatccggatcggcgacgcggtg
cgcgtgcaagtcgaccgcgtcgacgcgccgcgcggccgggtcgacctcttccccgtcgag
ctgtga
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