Corynebacterium xerosis: FOB82_11380
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Entry
FOB82_11380 CDS
T06491
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cxe
Corynebacterium xerosis
Brite
KEGG Orthology (KO) [BR:
cxe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxe03019
]
FOB82_11380 (hrpA)
Enzymes [BR:
cxe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FOB82_11380 (hrpA)
Messenger RNA biogenesis [BR:
cxe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FOB82_11380 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
HA2_N
ABC_tran
NACHT
AAA_11
CCDC-167
PhoH
AAA_23
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QGS35959
UniProt:
A0A6B8TM68
LinkDB
All DBs
Position
complement(2464668..2468606)
Genome browser
AA seq
1312 aa
AA seq
DB search
MDKRPIYARLDGVTYAEARSFRRRLKRASAPNAVHAIAEDIELARLRVEERRACLPTITY
PESLPVSARRDDIAEAIENNQVTVIAGETGSGKTTQIPKILLDLGRGVLGKIGHTQPRRL
AARTVAERIADELGEKIGGHVGYAIRFDDRIGRDTCVKLMTDGILLAEIQRDRLLLDYDT
IIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDPERFAEHFADADGTPAPIIE
VSGRTFPVEVRYRPLTAEETVTRKNGQVETRVTDIDQIDGVVGACRELMREGDGDILVFF
SGEREIREAAEAIEGQKWRGVEVLPLFGRLSNAEQHRVFGPHASRRIVLATNIAETSLTV
PGIHYVVDTGTARISRYSTRTKVQRLPVEPVSQASANQRSGRCGRVADGIAIRLYSEEDF
LSRPEFTDPEIQRTNLASVILQMANLGLGDVAAFPFVDAPDHKAIRDGVQLLDELGALAK
PEEDAGPSSSKTGSNALALTPTGRELARIPVDPRLARMLVEAHANGALKPVTVVVAALSL
QDVRERPLEKQAQADQAHARFKDATSDFLSYLKLWEHLQDKRRELSGNQFRKMCQREFLH
YMRVREWQDLIRQLNQVVADLGWNWSAEGNEPSPDSIHQSLLAGLLSQIGVREGEGKEFT
GTRNTKFLVHPASALSKKPPRWVMAAEIVETSRTFARDAARIEPAWVEKLASHLLKHQYS
EPHWSTKRGAAMAYQKSTLYGVPVVVDRAVPYHRVDPTAAREMFIRHALVDGEWTTHHQF
FADNRAKLEEAAQLEDKARRRGIVVDDDTLYAFYDAKIPHTATTAANFDRWWKKTSQSDP
HLLDFEPHALVNPDSHDVDAAAFPDLWQQGTLDFQLSYRFEPGADDDGVTLHVPVPLLAG
LRMEGFDWLVPGLRQELVESLIRTLPKASRRSVVPAPDFAARALASMTPYARPLRESLAD
ALRQLGGSGINADDFDVSKLPAHLRFNFATVDRRGEITDQDRDLEALQRRRAGQVTTAVS
KAAGGSEHAAVKEWTADNLGAVPETVQNTVDGQKVTAYPTLVATKEGVAVKVVPTEAQAK
ASLVTATLTMLLRDCPVQAKSMVKGLPLQQRVAVDAWPHGGAEGLVEDCRVTVIRDLMMA
GGGPVRDPDEYAKLRDSVKPQVPGQVRRLVVEMAKALPTYHRVVSQLAEWDGPAIDDMRA
QLEFMLPKGAVARHGWANLRHLPRYLEAMEIRLADMALDPDRDAELEDEVAEVGEYLEKR
LQRLPEGRRRSVAVRDIGWMVQELRVSLFAQRLGTARAVSPQRIKKAIDKLN
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcggcccatctacgcccgcctggacggcgtgacgtacgcggaggcccgcagt
ttccgccgccgcctcaagcgcgcctcggcgcccaacgccgtccacgccatcgcagaggac
atcgagctggcgcggctgcgcgtcgaggaacgccgcgcctgcctgccgactatcacgtac
ccggagtcgctgccggtctccgcccgccgcgacgacatcgccgaggccatcgagaataac
caggtcaccgtcatcgccggcgaaaccggttcgggcaagaccacgcagatcccgaagatc
ctgctcgacctgggccgcggcgtgctgggcaagatcggccacacgcagccgcgccgcctg
gccgcgcgcacggtggccgaacgcatcgccgacgagctcggcgagaagatcggcggccac
gtcggctacgccatccgtttcgacgaccgcatcggccgcgacacgtgcgtcaagctcatg
accgacggcattctgctggcagagattcagcgcgaccggctgctgctcgactacgacaca
atcatcatcgacgaggcccacgaacgcagcctcaacatcgatttcttgctgggctacctc
aagcggctactgcccaagcgcccggacctgaaggtcatcatcacctcggcgacgatcgac
ccggagcgtttcgcggagcatttcgccgacgccgacggcacgcccgccccgatcatcgag
gtctccggccgcacgttcccggtcgaggtccgctatcgcccgttgaccgccgaggaaacc
gtcacgcgcaagaacggccaggtcgaaacccgggtcacggacatcgaccagatcgacggc
gtcgtcggcgcctgccgcgagctcatgcgcgagggcgacggcgacatcctggtgttcttt
tccggcgagcgcgagatccgcgaggccgccgaagccatcgagggccagaagtggcgcggt
gtcgaggtcctccccttgttcggccgattgtcgaatgcggagcagcaccgggttttcggt
ccgcatgcttcacgacgcatcgtcctggccaccaacatcgccgaaacgtcgctgacggtt
ccgggcatccactacgtcgtcgacaccggtaccgcgcgcatctcccggtactcgacgcgc
acgaaggtccagcgcctgcccgtcgagccggtgagccaggccagcgccaaccagcgttcg
ggccggtgcggccgcgtggccgacggcatcgccatccgtctgtactccgaggaggacttt
ctctcccgcccggagttcaccgacccggagatccagcgcaccaacctcgcgtcggtgatc
ctgcagatggccaacctcggcctcggcgacgtcgcggccttccctttcgtcgacgccccc
gaccacaaagccatccgcgacggcgtgcagcttctcgacgaactcggggccctggcaaaa
ccagaggaagacgccgggccgtcgtcaagcaagaccggatccaacgcgctcgccctgacc
cccaccggccgcgaactggcgcgcatccccgtcgacccgcggctggcgcgcatgctggtc
gaggcccacgccaatggcgcgctcaaacccgtgaccgtggtcgtggcggcgctgagcctg
caggacgtgcgtgaacggccattggaaaagcaggcgcaggccgaccaggcgcacgcccgc
ttcaaggacgccaccagcgacttcctgtcctacttgaagctgtgggagcacctgcaggac
aagcgccgcgagctgtccggcaaccagttccgcaagatgtgccagcgagaattcctgcac
tacatgcgcgtgcgcgagtggcaggacctgatccgccagctcaaccaggtcgtcgccgat
ctgggttggaactggtcggccgagggcaacgaaccctcccccgattccatccaccagtcg
ctgctggccggcctgctgtcgcagatcggcgtgcgcgaaggcgagggcaaggagttcacc
ggcacccgcaacacgaagttcctggtgcacccggcgtcggcgctgtcgaagaagccgccg
cgctgggtgatggccgcggagatcgtcgagacctcccgcaccttcgcccgcgacgccgcg
cgcatcgagccggcgtgggtggaaaagctggcctcgcacctgctcaagcaccagtactcc
gagccgcattggtccaccaagcgcggcgcggccatggcgtaccagaagtcgacgctctac
ggcgtgcccgtcgtcgtcgaccgcgcggtgccgtaccaccgcgtcgacccgacggccgcg
cgcgagatgttcatccgccacgcgctcgtcgacggcgagtggaccacccaccaccagttc
ttcgccgacaaccgcgccaagcttgaggaggccgcacagctggaggacaaggcgcgccgc
cgcggcatcgtcgtcgacgacgacacgctctacgccttctacgacgccaagatcccgcat
accgcgaccaccgccgcgaacttcgaccggtggtggaagaagacgtcgcagtcggacccg
cacctgctcgacttcgaaccgcacgcgctggtcaaccccgattcccacgacgtcgacgcc
gccgctttccccgacctgtggcagcagggcaccctggatttccagttgtcctaccgcttc
gagccgggtgccgacgacgacggcgtcaccctccacgtccccgtgcccctgctggcgggc
ctgcgcatggagggcttcgactggctggtgccgggtctgcggcaggagctcgtggagtcg
ttgatccgcacgttgcccaaggcttcacgacgctccgtcgtccccgccccggacttcgcc
gcacgggctctggcgtccatgaccccctacgcccggcccctgcgtgagtcgcttgccgac
gcattgcgccaactgggtggttcgggcattaacgccgacgacttcgacgtatccaagttg
cctgcgcacctgcgcttcaacttcgccaccgtggatcggcgcggggagatcaccgaccag
gaccgcgacctggaggcactgcagcggcgccgcgccggtcaggtgaccacggccgtgtcc
aaggccgccggcggctccgaacatgccgcggtgaaggaatggaccgccgacaacctgggg
gccgtgccggaaaccgtccagaacaccgtcgacggccagaaggtcaccgcttacccgacg
ctggtggccacgaaggagggcgtggccgtcaaggtcgtgcccaccgaagcccaggcgaag
gcatcgttggtcacggcgacgctgaccatgctgctgcgcgactgccccgtccaggccaag
tcgatggtcaagggccttcccctgcaacagcgggtggccgtcgacgcgtggccgcacggt
ggtgccgagggcctggtcgaggattgccgcgtgacggtgatccgcgatctgatgatggcc
gggggcggtcccgtgcgcgatcctgacgagtacgcgaagctgcgtgattccgtgaagccc
caggtgccgggtcaggtgcggcggttggtggtcgaaatggccaaggcattgccgacgtat
caccgcgtcgtgtcgcagttggccgagtgggacggccccgcgatcgacgacatgcgggcg
cagctggagttcatgctgcccaagggtgccgtcgcacggcacggctgggcgaacctgcgg
catctaccgcggtacctggaggccatggagatccggttggcggacatggcgctggatccg
gatcgggacgccgagttggaggacgaagtcgccgaggtcggcgagtacctggagaaacgc
ttgcagcgcctgcccgaggggcggcgcaggtcggtggccgtgcgggacatcgggtggatg
gtgcaggaattgcgcgtcagcttgttcgcccagcgcctgggcaccgcgagggcggtgtcg
ccgcagcggattaagaaggcgatagacaagctgaactag
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