Cyclobacterium xiamenense: ABWH99_00300
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Entry
ABWH99_00300 CDS
T10772
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH99_00300 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxi03019
]
ABWH99_00300 (rnr)
03016 Transfer RNA biogenesis [BR:
cxi03016
]
ABWH99_00300 (rnr)
Enzymes [BR:
cxi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABWH99_00300 (rnr)
Messenger RNA biogenesis [BR:
cxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABWH99_00300 (rnr)
Transfer RNA biogenesis [BR:
cxi03016
]
Prokaryotic type
tRNA degradation factors
ABWH99_00300 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
RNase_II_C_S1
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
XHC45976
LinkDB
All DBs
Position
65860..68037
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AA seq
725 aa
AA seq
DB search
MGRKSGRKKSGFRNKEGKSSGLSQLKHQLTQFLDSNFGEEFAEKQLIKKLALRDASSKKL
LDDALQELLASGNVSKSPRNLYSSAADPEFITGEVDFVNARFAFIIPEDQEKKENDILVK
ETDLKTALDGDKVRILVLPQKGKGGKREGKVLEILERCRDEFVGRVEISPRFAFVVPDFK
KMHQDIFVKKTDLAGAQHNQKVIVKLTDWKEGDKSPTGKIVRVLGEAGDHEVEIHSIMAE
FGLPFEYPEDAMAEAETIPESIPAEELEKRRDFRSVDTFTIDPADAKDFDDAISFRKLEN
GNMEIGVHIADVSHYVSPKSIMEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNEDK
LTFSCVFEMNEEAQVRNFWIGRTVIHSNRRFSYEEAQENMDQGAGEYAGELQTLNGLAKK
LRRARFKKGAINFETVEVKFKLDEKGTPIGLIIKERKDVHKLIEEFMLLANKTVAQYIFD
KNKGKSTFVYRIHDYPDLEKLNTFANFARKFGHELQISDEKKVANSLNKLMDEIVGKPEQ
NVLEQLAIRSMAKAKYTTEPKLHFGLAFPHYTHFTSPIRRYPDLMVHRLLQHYLSGGKPP
DNQAWEEKCVHSSEREKRAADAERASIKYKQVEYMKLAEEKDYAGMVTGITEWGVYVEIV
ETKCEGMVRVQDMTDDYYDFDEKNMRLIGSKNKKIITLGDKVMVRVTRTDIDRRTIDLEF
VNDGK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaaatctggaagaaaaaaatcaggattcagaaataaagagggaaaatcctct
ggattgtcacaactgaaacatcagctcacgcaatttttagacagcaatttcggggaggaa
ttcgccgaaaaacaactgataaaaaaactcgccttacgcgacgcctcctccaaaaaacta
ctggacgatgccttgcaggagcttttggcaagcggaaatgtttccaagagcccacgaaac
ctctattcttccgcggcagatcccgaattcatcacgggagaggtagactttgtcaatgcc
cgatttgcgtttattattcccgaggatcaggaaaaaaaggaaaacgatattctggtaaaa
gagaccgatctcaaaacggccctggacggtgacaaggtgcgcattctggtcttgccccaa
aaaggaaaaggcggcaaacgggagggaaaagtactggaaatactcgaacgctgcagggat
gaatttgtgggccgggtcgaaatttccccgcgatttgcctttgtcgttccggatttcaaa
aaaatgcatcaagacatttttgttaaaaaaaccgaccttgcaggtgcccagcacaaccaa
aaggtaattgtcaaacttaccgactggaaggaaggcgacaagagtcctaccggtaagatt
gtccgggtactgggagaggcaggagaccacgaagtagaaattcactccatcatggcagaa
ttcggactcccttttgaataccccgaagacgccatggcggaagccgaaaccataccggaa
agcatccccgccgaagaattggaaaaaaggcgggattttcgatccgtggatacctttaca
atcgacccggcggatgccaaggattttgacgacgctatctcttttcggaagctggaaaac
ggaaacatggaaattggtgtgcacattgctgatgtaagccattacgtcagcccaaagtcc
atcatggaaaaagaggcgtacgaccgggctacttccgtatacctggtagatcggaccatc
cccatgcttcccgaaagactgagcaatgggttgtgttcccttcggccaaacgaagacaag
cttaccttttcctgtgtgtttgagatgaacgaggaagctcaggtgcggaatttctggatc
ggacgcacggtcatccattccaaccggcggtttagctacgaagaggcccaggaaaacatg
gatcagggtgcgggtgaatatgccggagaattgcaaaccctcaacggcctggcaaagaaa
ctccgccgggcacggtttaaaaaaggagccattaattttgagaccgtagaggtaaagttc
aaattggacgagaaaggcacgccgataggcctgataataaaagaacgaaaggacgttcac
aagctcatcgaagagtttatgctcctggccaacaagacggttgcgcagtatatcttcgat
aaaaataaggggaaaagtacctttgtctaccgaatacacgattatcctgacctcgaaaaa
ctcaacactttcgccaattttgccaggaaatttggacacgagttgcaaatcagtgacgaa
aaaaaagtggccaatagtttgaacaagctaatggatgaaatagttgggaaacccgaacag
aatgtattggagcaattggcgattcgcagcatggcaaaagcgaaatataccactgaaccc
aaactccatttcggacttgcattccctcattacacccatttcacctctccgatcagaagg
tatccggatctgatggtgcatcggctgttgcaacattacctcagcggaggcaaaccaccc
gataatcaggcatgggaagagaagtgcgtgcattcttctgaacgggaaaaacgagcagca
gacgccgagcgtgcaagtatcaagtacaaacaggtcgagtacatgaaactagcagaagaa
aaggattatgccggcatggtcaccgggatcacggaatggggtgtgtatgtagaaatcgta
gaaaccaaatgcgagggcatggtccgggtacaggacatgacagacgattactacgatttc
gacgagaaaaacatgcggctaatcggttccaaaaataagaaaatcatcacacttggagac
aaggtcatggtccgcgtcacccgaaccgatatagaccggagaaccatagatctggaattt
gttaacgatggtaaatga
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