Cyclobacterium xiamenense: ABWH99_00490
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Entry
ABWH99_00490 CDS
T10772
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABWH99_00490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cxi03400
]
ABWH99_00490 (mfd)
Enzymes [BR:
cxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWH99_00490 (mfd)
DNA repair and recombination proteins [BR:
cxi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABWH99_00490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
XHC46013
LinkDB
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Position
complement(115825..119172)
Genome browser
AA seq
1115 aa
AA seq
DB search
MDRSSFLSLYEEDPFVRNLALALSQGGDSRMQVRGLSGSMDMVLLQAITKLAGGFHVVLA
HDREEAAYLAGDWQALTGSQPYLFPASYKKPYHHEDIENANVLIRAEILNQLSQSSTDGK
VLISSPEAIYEKVVNKKSLKESTFTVRTGELVDLAFVEELFTTYGFEKSDFVYEAGQFAV
RGGIIDVFSYANDLPYRLELFGQQIDSIRVFDPETQLSTTPVDQINILPNIQTTLQEESR
QPLADFFPPDTCFWIKDYAHCMGVLEGLYQKAENYFREGGTAGKSLLMAPEKLFLSGAEF
EAAISPFRQIAFGHVFSWNDVPEFLFHGQPQPSFNKHFDLLVKDLNENASKGIRNIICSE
SDKQIGRLLNIFSELDPSLEVQTLPIGLRAGFIDMSLKLACYTDHQLFERYHRYKTSRTS
SKSKALTLKEIKDLHPGDFIVHVDYGIGRFAGLEKVEVNGKLQEAIRLVFRDDDLLFVNI
HSLHKISKYSSQEGTLPTMSKLGSQDWENKKSKVKKKVKDIAKDLIRLYSKRKSAPGHRF
SSDSVLQVELESSFIYEDTPDQAMATADVKEDMEKPYPMDRLVCGDVGFGKTEVAVRAVF
KAVNDRKQVAVLVPTTILAMQHYQTFKERLADFPVEVAYINRFRTAKEIKEIIEKTGNGE
IDVLIGTHRIVNKDIKFKDLGLLVIDEEQKFGVKVKEQLKQLRVNVDVLTLTATPIPRTL
HFSLMGARDLSVIATPPPNRQPVTTEIYTFREDIIRDAIANELSRGGQVFFVHNRVGEID
SIANLILRLVPDARVVGAHGQMDGKKLEKIMVDFIEGVYDVLVSTNIIESGLDIPNANTI
IINRAHMFGMSDLHQMRGRVGRSNKKAFCYLLTPPTSTLSAESRKRLQALEEFSDLGDGF
KVAMRDLDIRGAGNLLGAEQSGFISDLGFEMYHKILDEAVQELKHTEFASLFASDLKEKT
AVLVQDCVIETDLELLIPDSYVSNISERLSLYSKLDGIKEEGDLAAFKLEIRDRFGPVPD
RVEALFETVELRWMAERLGFEKLTLKNEQMKCYFVSSKNDQYFNSAVFRSIIAFIQSNGR
FCKIKETKDRLLLIIKGVDSIGKAKKWLQNMLANE
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
ttggatagatcatcatttttgtcgctttacgaagaggatccctttgtccggaaccttgcc
cttgccttgagccaggggggggattcccgcatgcaggtgcggggcttatccggtagtatg
gacatggtcctccttcaagcgattaccaaactggcaggaggatttcacgtggttttggcg
catgacagggaggaggcagcttaccttgccggagattggcaggcactgaccggttcccag
ccctatctgtttccagccagctacaaaaagccctaccaccacgaggacatcgaaaatgcc
aatgtgctgattcgcgcggagattctgaaccagctttcccagtcatccaccgatggcaag
gttttgatcagctctccggaggccatctacgaaaaggtggtcaataagaaaagtttgaaa
gaaagcacctttaccgttcggaccggtgaattggtggatttggcctttgtcgaagagttg
tttactacctacgggtttgaaaaatccgattttgtgtacgaagcagggcaatttgctgtc
agaggcgggatcatcgatgttttttcctacgccaacgatctgccataccgactagaattg
tttggacaacagatcgatagcattcgcgtgttcgaccccgaaacccagttgtccaccact
ccggttgatcaaatcaatatcctacccaatattcaaaccaccctacaagaagagtccagg
cagccgctggcagacttcttccctcccgacacctgtttttggatcaaggattacgcccac
tgtatgggcgtattggagggcttgtaccagaaggccgaaaattattttcgggagggaggg
accgccggaaagtccttgttgatggcacctgagaagcttttcttgtccggggctgagttt
gaggcggccatttctccattccggcaaatcgcctttgggcacgtattttcgtggaacgac
gtgccggaatttctatttcacgggcagccgcagccgtctttcaataagcattttgattta
ttggtcaaggacttgaacgaaaacgcgtccaagggtatccggaatatcatttgttcggaa
agcgacaagcaaataggcaggttgttgaatattttttcggaactggaccctagtttggag
gtccaaaccctacccattggattgcgggcggggtttattgacatgtcattgaaactggct
tgttatacagaccatcagctatttgagcggtaccaccggtacaagaccagccgtaccagt
agcaagtccaaagcgcttaccctcaaggaaattaaagatttgcatccgggggacttcatc
gttcacgtggattatgggatcggaaggtttgccggactggaaaaggtggaggtaaatggt
aaactgcaggaggcaattcgactggttttccgcgacgatgacttattgtttgtcaacatt
cattcgctgcataaaatttctaaatacagcagccaggaaggaacgcttcccaccatgtcg
aaacttggttctcaggattgggaaaataagaaaagcaaggtgaagaaaaaggtaaaggac
attgccaaagacctcatccggctgtattccaaaagaaaatccgcccccggccaccgtttc
tcctcggatagtgtactccaggtagaacttgaaagctcgttcatttatgaagatacgccc
gaccaggcaatggctactgcggatgtcaaagaagacatggagaaaccctacccaatggac
cggttggtatgcggagacgtgggttttggtaaaacggaagtggcagtacgtgcggtcttt
aaggcggtaaatgaccgaaagcaagtggcggtattggtgcctaccaccatacttgccatg
cagcattaccaaacctttaaagaaagactggccgatttcccggttgaagtggcctatatc
aaccgctttcgaacagcaaaggagataaaagaaatcatcgagaaaacaggcaatggggaa
attgacgtgctgatcggtacccaccggattgtaaacaaggacattaaatttaaagacctg
ggcttattggtcatagacgaagagcagaaattcggcgtgaaggtaaaggaacaactcaaa
caactacgtgtgaacgtggacgtactcacgctgaccgccactcccattccccggaccttg
catttttctctgatgggagccagggacctttcggtgatcgccacccctccgccaaacaga
cagccggtgaccactgaaatctatacctttcgggaggatatcatccgggatgcgatcgcc
aatgagctgagtcgcggggggcaggtatttttcgtgcataaccgcgtaggagaaatcgat
tccattgcgaacctgattcttcggctcgtgcccgatgcacgagtggtcggcgcacacggc
cagatggatggaaaaaagctcgaaaagatcatggtggattttattgaaggggtctacgat
gtactggtttccaccaacatcatcgaatccggactggatattcccaatgcgaataccatc
ataatcaatcgtgcacacatgtttggtatgagtgacctgcatcaaatgagagggcgagtg
gggcgcagcaacaagaaagcattttgctacctcctgacgcctcccacttccaccctaagt
gccgagtcgagaaagcggctacaggccttggaagaattttccgatttgggagacggattt
aaagtggccatgcgggacctggatatacgcggtgctggaaacctgcttggcgccgagcaa
agtggctttatttcagatttgggcttcgaaatgtaccataagatactggatgaagccgtt
caggagttgaaacacaccgaatttgccagcctgtttgcatccgatttgaaggaaaaaact
gccgtactggtgcaggactgtgtgattgaaacggatctggaactcctgattcccgatagc
tatgttagcaatatttcggaaaggctgagcctctattccaaattggatgggatcaaagaa
gaaggggatcttgcggcgtttaaattagagatacgggatcggtttgggcccgttccggac
cgggtggaggctttgtttgaaaccgtggaactccggtggatggccgagcgcctgggcttt
gaaaaactgaccttgaaaaatgaacaaatgaaatgctacttcgtttcttctaaaaacgat
cagtacttcaattctgcggttttccgaagcatcatcgcgttcattcagtccaatgggcgg
ttttgtaaaataaaagaaacaaaagatcgtttactactcataatcaaaggtgttgattcc
attggaaaggccaaaaaatggctacaaaatatgctggcaaacgagtaa
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