Cyclobacterium xiamenense: ABWH99_02040
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Entry
ABWH99_02040 CDS
T10772
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cxi Cyclobacterium xiamenense
Pathway
cxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH99_02040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cxi03019
]
ABWH99_02040
Enzymes [BR:
cxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWH99_02040
Messenger RNA biogenesis [BR:
cxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH99_02040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Helicase_C_2
SUa-2TM
CMS1
HEM4
Utp25_C
Cas3-like_C_2
Laman-like_dom
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
XHC46306
LinkDB
All DBs
Position
480651..481889
Genome browser
AA seq
412 aa
AA seq
DB search
MTFKELHLIEPLLKALQEKNYVEPTAIQKKAIPQVLAKRDILGSAQTGTGKTAAFALPII
QLLHTDSSEEKGRVRIKSLIVTPTRELAIQIHENLEFYGKYTRLKHAVIFGGVKQGSQVS
ALNRGVDVLVATPGRLLDLINQGYIKLDQIKIFVLDEADRMLDMGFINDIKKLLKLLPSK
RQSLFFSATMPDNIVGLANEILTDPIKIEVSPVSSAAETLQQKVYYTNKSTKKDLLFHIL
KDKKIDQVLLFSRTKHGADKITKNLKGAGIEAAAIHGNKAQNHRQKVLNQFKDGSIRVLV
ATDIAARGIDIDKLQYVINYDIPEDPETYVHRIGRSGRAGESGTAISLCEPEENGDVRAI
ENLIRQKIDVADNNPFPQTDKPMTAQEKKEHNKEKQRKKQAFFANRKNSRSR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattacatttaatagaacccttactgaaagcgcttcaggaaaaaaat
tatgttgagccgacagccatccaaaaaaaagccattccgcaggtattggccaaaagagac
attctgggtagtgcgcagacaggtaccggcaaaaccgcagcttttgccttgccaatcatt
cagctccttcataccgattcttcggaagagaaaggccgcgtccgtatcaaatcactcatc
gttacccctacgcgggaactggccatacaaatccacgaaaaccttgagttttatgggaaa
tatacccgactaaagcatgcggttattttcgggggtgtaaaacaaggatcgcaggtaagc
gccctgaaccggggcgtagacgtgctggtcgccacgcctggaaggcttctggacctgatc
aatcaagggtacatcaaactggatcaaatcaagatttttgttctggacgaagccgaccgc
atgttggacatgggctttatcaatgatatcaaaaagctgctgaaattgctgccttcgaaa
agacaatccctctttttctcggccaccatgcccgacaatatcgtaggcctcgccaatgaa
atactaaccgatccaatcaaaattgaggtgagtcccgtctcttcggccgccgaaaccctg
caacaaaaggtatattataccaacaagtccaccaaaaaagacttgcttttccatattctg
aaagacaaaaaaattgaccaggtcctccttttctcacgaaccaaacacggggcggataaa
ataacgaaaaacctaaaaggggccggcatagaggcggctgccattcacggcaataaagcg
caaaaccaccggcaaaaagtgctcaaccaattcaaagatgggtccattcgcgtactcgtg
gccaccgacattgccgcacggggcatcgatatcgacaagctccagtacgttatcaattac
gatattcccgaagatccggaaacctatgttcaccggatcgggagatctggaagagccggg
gaatccggtacagccatttccctgtgcgagccggaagaaaacggagacgtacgcgccatt
gaaaacctaatccggcagaaaattgatgtggcagacaacaatccttttccccaaaccgac
aaacccatgacggcccaggaaaagaaagaacacaacaaggaaaagcaacgaaagaagcaa
gccttctttgcaaaccgcaaaaactccagatcccgatag
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